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comparison planemo/lib/python3.7/site-packages/cwltool/tests/wf/directory.cwl @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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1 #!/usr/bin/env cwl-runner
2 cwlVersion: v1.0
3 class: Workflow
4
5 doc: >
6 Inspect provided directory and return filenames.
7 Generate a new directory and return it (including content).
8
9 hints:
10 - class: DockerRequirement
11 dockerPull: debian:8
12
13 inputs:
14 dir:
15 type: Directory
16
17 steps:
18 ls:
19 in:
20 dir: dir
21 out:
22 [listing]
23 run:
24 class: CommandLineTool
25 baseCommand: ls
26 inputs:
27 dir:
28 type: Directory
29 inputBinding:
30 position: 1
31 outputs:
32 listing:
33 type: stdout
34
35 generate:
36 in: []
37 out:
38 [dir1]
39 run:
40 class: CommandLineTool
41 requirements:
42 - class: ShellCommandRequirement
43 arguments:
44 - shellQuote: false
45 valueFrom: >
46 pwd;
47 mkdir -p dir1/a/b;
48 echo -n a > dir1/a.txt;
49 echo -n b > dir1/a/b.txt;
50 echo -n c > dir1/a/b/c.txt;
51 inputs: []
52 outputs:
53 dir1:
54 type: Directory
55 outputBinding:
56 glob: "dir1"
57
58 outputs:
59 listing:
60 type: File
61 outputSource: ls/listing
62 dir1:
63 type: Directory
64 outputSource: generate/dir1
65