Mercurial > repos > guerler > springsuite
diff planemo/lib/python3.7/site-packages/cwltool/tests/wf/directory.cwl @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
| author | guerler |
|---|---|
| date | Fri, 31 Jul 2020 00:18:57 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo/lib/python3.7/site-packages/cwltool/tests/wf/directory.cwl Fri Jul 31 00:18:57 2020 -0400 @@ -0,0 +1,65 @@ +#!/usr/bin/env cwl-runner +cwlVersion: v1.0 +class: Workflow + +doc: > + Inspect provided directory and return filenames. + Generate a new directory and return it (including content). + +hints: + - class: DockerRequirement + dockerPull: debian:8 + +inputs: + dir: + type: Directory + +steps: + ls: + in: + dir: dir + out: + [listing] + run: + class: CommandLineTool + baseCommand: ls + inputs: + dir: + type: Directory + inputBinding: + position: 1 + outputs: + listing: + type: stdout + + generate: + in: [] + out: + [dir1] + run: + class: CommandLineTool + requirements: + - class: ShellCommandRequirement + arguments: + - shellQuote: false + valueFrom: > + pwd; + mkdir -p dir1/a/b; + echo -n a > dir1/a.txt; + echo -n b > dir1/a/b.txt; + echo -n c > dir1/a/b/c.txt; + inputs: [] + outputs: + dir1: + type: Directory + outputBinding: + glob: "dir1" + +outputs: + listing: + type: File + outputSource: ls/listing + dir1: + type: Directory + outputSource: generate/dir1 +
