Mercurial > repos > guerler > springsuite

annotate planemo/lib/python3.7/site-packages/cwltool/tests/wf/directory.cwl @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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1 #!/usr/bin/env cwl-runner
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2 cwlVersion: v1.0
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3 class: Workflow
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4
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5 doc: >
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6 Inspect provided directory and return filenames.
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7 Generate a new directory and return it (including content).
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8
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9 hints:
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10 - class: DockerRequirement
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11 dockerPull: debian:8
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12
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13 inputs:
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14 dir:
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15 type: Directory
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16
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17 steps:
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18 ls:
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19 in:
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20 dir: dir
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21 out:
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22 [listing]
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23 run:
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24 class: CommandLineTool
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25 baseCommand: ls
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26 inputs:
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27 dir:
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28 type: Directory
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29 inputBinding:
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30 position: 1
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31 outputs:
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32 listing:
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33 type: stdout
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34
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35 generate:
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36 in: []
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37 out:
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38 [dir1]
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39 run:
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40 class: CommandLineTool
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41 requirements:
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42 - class: ShellCommandRequirement
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43 arguments:
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44 - shellQuote: false
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45 valueFrom: >
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46 pwd;
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47 mkdir -p dir1/a/b;
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48 echo -n a > dir1/a.txt;
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49 echo -n b > dir1/a/b.txt;
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50 echo -n c > dir1/a/b/c.txt;
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51 inputs: []
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52 outputs:
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53 dir1:
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54 type: Directory
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55 outputBinding:
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56 glob: "dir1"
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57
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58 outputs:
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59 listing:
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60 type: File
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61 outputSource: ls/listing
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62 dir1:
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63 type: Directory
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64 outputSource: generate/dir1
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65