Mercurial > repos > hepcat72 > extractsplitreads_bwamem

comparison extractSplitReads_BwaMem.xml @ 1:a20ac5d90c16 draft default tip

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planemo upload commit 0066847e0ac19632c3091ac3148069de3bb3855f-dirty
author hepcat72
date Fri, 10 Aug 2018 13:15:57 -0400
parents 839c219ab0aa
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0:839c219ab0aa 1:a20ac5d90c16
1 <tool id="extractsplitreads_bwamem" 1 <tool id="extractSplitReads_BwaMem"
2 name="Extract Split Reads" 2 name="Extract Split Reads"
3 version="0.1.0"> 3 version="0.1.0">
4 4
5 <description>from bwaMEM (part of lumpy-sv)</description> 5 <description>from bwaMEM (part of lumpy-sv)</description>
6 6
7 <requirements> 7 <requirements>
8 <requirement type="package" version="0.2.14a">lumpy-sv</requirement> 8 <requirement type="package" version="0.2.14a">lumpy-sv</requirement>
9 </requirements> 9 </requirements>
10
11 <!-- Not sure yet how to call the command if the lumpy-sv package in bioconda doesn't put the script in an executable location on PATH -->
12 10
13 <version_command>extractSplitReads_BwaMem | grep ^extractSplitReads_BwaMem | cut -d v -f 2</version_command> 11 <version_command>extractSplitReads_BwaMem | grep ^extractSplitReads_BwaMem | cut -d v -f 2</version_command>
14 12
15 <command detect_errors="aggressive"> 13 <command detect_errors="aggressive">
16 <![CDATA[ 14 <![CDATA[