|
0
|
1 <tool id="cshl_fastx_nucleotides_distribution_line_plot" name="Draw nucleotides distribution line chart">
|
|
|
2 <command>
|
|
|
3 fastx_nucleotide_distribution_line_graph.sh -i '$input' -o '$output'
|
|
|
4 </command>
|
|
|
5
|
|
|
6 <inputs>
|
|
|
7 <param format="txt" name="input" type="data" label="Statistics Text File (output of 'FASTX Statistics' tool)" />
|
|
|
8 </inputs>
|
|
|
9
|
|
|
10 <outputs>
|
|
|
11 <data format="png" name="output" metadata_source="input"
|
|
|
12 />
|
|
|
13 </outputs>
|
|
|
14 <help>
|
|
|
15
|
|
|
16 **What it does**
|
|
|
17
|
|
|
18 Creates a line and points graph for the nucleotide distribution in the Solexa library.
|
|
|
19
|
|
|
20 .. class:: infomark
|
|
|
21
|
|
|
22 **TIP:** Use the **FASTQ Statistics** tool to generate the report file needed for this tool.
|
|
|
23
|
|
|
24 -----
|
|
|
25
|
|
|
26 **Output Examples**
|
|
|
27
|
|
|
28 .. image:: ../static/fastx_icons/fastq_nucleotides_distribution_line_graph.png
|
|
|
29
|
|
|
30 ------
|
|
|
31
|
|
|
32 This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon.
|
|
|
33
|
|
|
34 .. __: http://hannonlab.cshl.edu/fastx_toolkit/
|
|
|
35
|
|
|
36 </help>
|
|
|
37 </tool>
|
|
|
38 <!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) -->
|
