Mercurial > repos > ieguinoa > data_manager_salmon_index_builder

comparison data_manager_conf.xml @ 5:3888ec1918d0 draft

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author ieguinoa
date Thu, 03 Jan 2019 10:51:18 -0500
parents c5dea2080109
children d22f69a2e80e
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4:ef2031036f47 5:3888ec1918d0
7 <column name="dbkey" /> 7 <column name="dbkey" />
8 <column name="name" /> 8 <column name="name" />
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${value}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${path}</target>
13 </move> 13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${value}/${path}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${path}</value_translation>
15 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
16 </column> 16 </column>
17 </output> 17 </output>
18 </data_table> 18 </data_table>
19 </data_manager> 19 </data_manager>