|
3
|
1 YAML -------------
|
|
|
2 ENA_experiment:
|
|
|
3 0:
|
|
|
4 alias: exp_test_alias_001
|
|
|
5 design_description: Lot's of coffe and magic
|
|
|
6 insert_size: 250.0
|
|
|
7 instrument_model: NextSeq 500
|
|
|
8 library_construction_protocol: Illumina COVIDSeq Test Kit
|
|
|
9 library_layout: PAIRED
|
|
|
10 library_name: Cov51
|
|
|
11 library_selection: RT-PCR
|
|
|
12 library_source: VIRAL RNA
|
|
|
13 library_strategy: AMPLICON
|
|
|
14 platform: ILLUMINA
|
|
|
15 sample_alias: sample_alias_001
|
|
|
16 study_alias: study_alias_001
|
|
|
17 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
|
|
|
18 1:
|
|
|
19 alias: exp_test_alias_002
|
|
|
20 design_description: Lot's of coffe and magic
|
|
|
21 insert_size: 250.0
|
|
|
22 instrument_model: NextSeq 500
|
|
|
23 library_construction_protocol: Illumina COVIDSeq Test Kit
|
|
|
24 library_layout: PAIRED
|
|
|
25 library_name: Cov51
|
|
|
26 library_selection: RT-PCR
|
|
|
27 library_source: VIRAL RNA
|
|
|
28 library_strategy: AMPLICON
|
|
|
29 platform: ILLUMINA
|
|
|
30 sample_alias: phiX2
|
|
|
31 study_alias: study_alias_001
|
|
|
32 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
|
|
|
33 ENA_run:
|
|
|
34 2:
|
|
|
35 alias: run_alias_001
|
|
|
36 experiment_alias: exp_test_alias_001
|
|
|
37 file_format: FASTQ
|
|
|
38 file_name: run001.fastq.gz
|
|
|
39 ENA_sample:
|
|
|
40 2:
|
|
|
41 alias: sample_alias_001
|
|
|
42 collecting institution: Umbrella Corp.
|
|
|
43 collection date: '2021-05-03'
|
|
|
44 collector name: "John Doe"
|
|
|
45 definition for seropositive sample: ''
|
|
|
46 2:
|
|
|
47 alias: phiX2
|
|
|
48 collecting institution: Umbrella Corp.
|
|
|
49 collection date: '2021-05-03'
|
|
|
50 collector name: "John Doe"
|
|
|
51 definition for seropositive sample: ''
|
|
|
52 ENA_study:
|
|
|
53 2:
|
|
|
54 alias: study_alias_001
|
|
|
55 study_abstract: "Help"
|
|
|
56 study_type: Whole Genome Sequencing
|
|
|
57 title: Whole genome sequencing of SARS-CoV-2
|
|
|
58 YAML -------------
|
|
|
59
|
|
|
60 Printing receipt to ./receipt.xml
|
|
|
61
|
|
|
62 Submission was done successfully
|
|
|
63
|
|
|
64 Study accession details:
|
|
|
65 study_alias_001 FAKE0001 2011-01-16T10:52:06.497+01:00 added
|
|
|
66
|
|
|
67 Sample accession details:
|
|
|
68 sample_alias_001 FAKESAMP001 2011-01-16T10:52:06.497+01:00 added
|
|
|
69 phiX2 FAKESAMP002 2011-01-16T10:52:06.497+01:00 added
|
|
|
70
|
|
|
71 Saving updates in new tsv tables::
|
|
|
72 save updates in ./submission_files/studies_updated.tsv
|
|
|
73 save updates in ./submission_files/samples_updated.tsv
|
|
|
74 save updates in ./submission_files/experiments_updated.tsv
|
|
|
75 save updates in ./submission_files/runs_updated.tsv
|
|
|
76 action_option add
|
