Mercurial > repos > imgteam > orientationpy
diff orientationpy.xml @ 1:df211f6b5cf2 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy commit c045f067a57e8308308cf6329060c7ccd3fc372f
author | imgteam |
---|---|
date | Thu, 04 Apr 2024 15:25:49 +0000 |
parents | 214f548481eb |
children | cc8fe984ec3e |
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--- a/orientationpy.xml Tue Mar 12 10:54:40 2024 +0000 +++ b/orientationpy.xml Thu Apr 04 15:25:49 2024 +0000 @@ -1,9 +1,13 @@ <tool id="orientationpy" name="Compute image orientation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0"> <description>with OrientationPy</description> <macros> + <import>creators.xml</import> <token name="@TOOL_VERSION@">0.2.0.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> + <creator> + <expand macro="creators/bmcv"/> + </creator> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> @@ -11,7 +15,7 @@ <xref type="biii">orientationj</xref> </xrefs> <requirements> - <requirement type="package" version="0.2.0.4">orientationpy</requirement> + <requirement type="package" version="@TOOL_VERSION@">orientationpy</requirement> <requirement type="package" version="0.22.0">scikit-image</requirement> </requirements> <command><![CDATA[ @@ -83,13 +87,15 @@ </test> </tests> <help> - Compute the orientation of 2-D images in degrees using OrientationPy. + + **Computes the orientation of 2-D images in degrees using OrientationPy.** OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin. It is a library that takes in images and computes the orientation of the greylevels. A key step is the computation of image gradients, for a number of different techniques is supported. For more information on ``--min_energy`` and ``--min_coherency`` see: https://epfl-center-for-imaging.gitlab.io/orientationpy/orientationpy_examples/plot_fibres_2d.html#plot-hsv-composition + </help> <citations> <citation type="doi">10.1007/s10237-011-0325-z</citation>