Mercurial > repos > insilicosolutions > cravat

comparison cravat/test-data/test_output.tsv @ 0:9e29dd2972ab draft

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author insilicosolutions
date Wed, 13 May 2015 15:24:18 -0400
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-1:000000000000 0:9e29dd2972ab
1 ID Chromosome Position Strand Reference base(s) Alternate base(s) Sample 1000 Genomes allele frequency Driver Genes ESP6500 allele frequency (African American) ESP6500 allele frequency (European American) ExAC allele frequency (African/African American) ExAC allele frequency (East Asian) ExAC allele frequency (Finnish) ExAC allele frequency (Latino) ExAC allele frequency (Non-Finnish European) ExAC allele frequency (Other) ExAC allele frequency (South Asian) ExAC total allele frequency HUGO symbol Mappability Warning Occurrences in COSMIC [exact nucleotide change] Occurrences in COSMIC by primary sites [exact nucleotide change] Protein sequence change in COSMIC Sequence ontology Sequence ontology all transcripts Sequence ontology protein change Sequence ontology transcript TARGET Transcript in COSMIC
2 TR1 chr22 30421786 + A T sample_1 0.0077875400893390178680419921875 0.02269629947841167449951171875 0 0.0238370001316070556640625 0 0 0.001123600057326257228851318359375 0 0.0011037499643862247467041015625 0 0.0021585500799119472503662109375 MTMR3 MS NM_153051.2:N1161I(MS), NM_153050.2:N1170I(MS), ENST00000323630:N1062I(MS), ENST00000351488:N1161I(MS), ENST00000333027:N1170I(MS), ENST00000406629:N1170I(MS), ENST00000401950:N1198I(MS) N1198I NM_021090.3
3 TR2 chr22 40814500 - A G sample_1 0.4832270145416259765625 0.860644996166229248046875 0.396977007389068603515625 0.871408998966217041015625 0.110581003129482269287109375 0.330637991428375244140625 0.1900829970836639404296875 0.3895820081233978271484375 0.3936649858951568603515625 0.4774529933929443359375 0.4003469944000244140625 MKL1 1 stomach(1) p.S648G (stomach 1) MS ENST00000396617:S648G(MS), ENST00000402042:S598G(MS), ENST00000407029:S648G(MS), ENST00000355630:S648G(MS) S648G NM_020831.3 ENST00000355630
4 TR3 chr22 25115450 + - AGG sample_2 0 0 0 0 0 0 0 0 0 0 0 PIWIL3 II NM_001255975.1:871(II), ENST00000533313:762(II), ENST00000527701:762(II), ENST00000332271:880(II) 880 NM_001008496.3
5 TR4 chr22 234234 + AGA - sample_2 0 0 0 0 0 0 0 0 0 0 0 Non-Coding
6 TR5 chr2 219134766 + G - sample_3 0 0 0 0.00038654799573123455047607421875 0 0 0 0.000482450588606297969818115234375 0 0 0.0002977323601953685283660888671875 AAMP 2 large_intestine(2) p.P15fs*5 (large_intestine 2) FD ENST00000248450:15(FD), ENST00000444053:15(FD) 15 NM_001087.3 ENST00000248450