--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cravat/test-data/test_output.tsv	Wed May 13 15:24:18 2015 -0400
@@ -0,0 +1,6 @@
+ID	Chromosome	Position	Strand	Reference base(s)	Alternate base(s)	Sample	1000 Genomes allele frequency	Driver Genes	ESP6500 allele frequency (African American)	ESP6500 allele frequency (European American)	ExAC allele frequency (African/African American)	ExAC allele frequency (East Asian)	ExAC allele frequency (Finnish)	ExAC allele frequency (Latino)	ExAC allele frequency (Non-Finnish European)	ExAC allele frequency (Other)	ExAC allele frequency (South Asian)	ExAC total allele frequency	HUGO symbol	Mappability Warning	Occurrences in COSMIC [exact nucleotide change]	Occurrences in COSMIC by primary sites [exact nucleotide change]	Protein sequence change in COSMIC	Sequence ontology	Sequence ontology all transcripts	Sequence ontology protein change	Sequence ontology transcript	TARGET	Transcript in COSMIC
+TR1	chr22	30421786	+	A	T	sample_1	0.0077875400893390178680419921875		0.02269629947841167449951171875	0	0.0238370001316070556640625	0	0	0.001123600057326257228851318359375	0	0.0011037499643862247467041015625	0	0.0021585500799119472503662109375	MTMR3					MS	NM_153051.2:N1161I(MS), NM_153050.2:N1170I(MS), ENST00000323630:N1062I(MS), ENST00000351488:N1161I(MS), ENST00000333027:N1170I(MS), ENST00000406629:N1170I(MS), ENST00000401950:N1198I(MS)	N1198I	NM_021090.3		
+TR2	chr22	40814500	-	A	G	sample_1	0.4832270145416259765625		0.860644996166229248046875	0.396977007389068603515625	0.871408998966217041015625	0.110581003129482269287109375	0.330637991428375244140625	0.1900829970836639404296875	0.3895820081233978271484375	0.3936649858951568603515625	0.4774529933929443359375	0.4003469944000244140625	MKL1		1	stomach(1)	p.S648G (stomach 1)	MS	ENST00000396617:S648G(MS), ENST00000402042:S598G(MS), ENST00000407029:S648G(MS), ENST00000355630:S648G(MS)	S648G	NM_020831.3		ENST00000355630
+TR3	chr22	25115450	+	-	AGG	sample_2	0		0	0	0	0	0	0	0	0	0	0	PIWIL3					II	NM_001255975.1:871(II), ENST00000533313:762(II), ENST00000527701:762(II), ENST00000332271:880(II)	880	NM_001008496.3		
+TR4	chr22	234234	+	AGA	-	sample_2	0		0	0	0	0	0	0	0	0	0	0	Non-Coding										
+TR5	chr2	219134766	+	G	-	sample_3	0		0	0	0.00038654799573123455047607421875	0	0	0	0.000482450588606297969818115234375	0	0	0.0002977323601953685283660888671875	AAMP		2	large_intestine(2)	p.P15fs*5 (large_intestine 2)	FD	ENST00000248450:15(FD), ENST00000444053:15(FD)	15	NM_001087.3		ENST00000248450