view cravat/test-data/test_output.tsv @ 0:9e29dd2972ab draft

Uploaded
author insilicosolutions
date Wed, 13 May 2015 15:24:18 -0400
parents
children
line wrap: on
line source

ID	Chromosome	Position	Strand	Reference base(s)	Alternate base(s)	Sample	1000 Genomes allele frequency	Driver Genes	ESP6500 allele frequency (African American)	ESP6500 allele frequency (European American)	ExAC allele frequency (African/African American)	ExAC allele frequency (East Asian)	ExAC allele frequency (Finnish)	ExAC allele frequency (Latino)	ExAC allele frequency (Non-Finnish European)	ExAC allele frequency (Other)	ExAC allele frequency (South Asian)	ExAC total allele frequency	HUGO symbol	Mappability Warning	Occurrences in COSMIC [exact nucleotide change]	Occurrences in COSMIC by primary sites [exact nucleotide change]	Protein sequence change in COSMIC	Sequence ontology	Sequence ontology all transcripts	Sequence ontology protein change	Sequence ontology transcript	TARGET	Transcript in COSMIC
TR1	chr22	30421786	+	A	T	sample_1	0.0077875400893390178680419921875		0.02269629947841167449951171875	0	0.0238370001316070556640625	0	0	0.001123600057326257228851318359375	0	0.0011037499643862247467041015625	0	0.0021585500799119472503662109375	MTMR3					MS	NM_153051.2:N1161I(MS), NM_153050.2:N1170I(MS), ENST00000323630:N1062I(MS), ENST00000351488:N1161I(MS), ENST00000333027:N1170I(MS), ENST00000406629:N1170I(MS), ENST00000401950:N1198I(MS)	N1198I	NM_021090.3		
TR2	chr22	40814500	-	A	G	sample_1	0.4832270145416259765625		0.860644996166229248046875	0.396977007389068603515625	0.871408998966217041015625	0.110581003129482269287109375	0.330637991428375244140625	0.1900829970836639404296875	0.3895820081233978271484375	0.3936649858951568603515625	0.4774529933929443359375	0.4003469944000244140625	MKL1		1	stomach(1)	p.S648G (stomach 1)	MS	ENST00000396617:S648G(MS), ENST00000402042:S598G(MS), ENST00000407029:S648G(MS), ENST00000355630:S648G(MS)	S648G	NM_020831.3		ENST00000355630
TR3	chr22	25115450	+	-	AGG	sample_2	0		0	0	0	0	0	0	0	0	0	0	PIWIL3					II	NM_001255975.1:871(II), ENST00000533313:762(II), ENST00000527701:762(II), ENST00000332271:880(II)	880	NM_001008496.3		
TR4	chr22	234234	+	AGA	-	sample_2	0		0	0	0	0	0	0	0	0	0	0	Non-Coding										
TR5	chr2	219134766	+	G	-	sample_3	0		0	0	0.00038654799573123455047607421875	0	0	0	0.000482450588606297969818115234375	0	0	0.0002977323601953685283660888671875	AAMP		2	large_intestine(2)	p.P15fs*5 (large_intestine 2)	FD	ENST00000248450:15(FD), ENST00000444053:15(FD)	15	NM_001087.3		ENST00000248450