Mercurial > repos > iracooke > protk_trans_proteomic_pipeline

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Update
author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:17:06 -0500
parents cedd5e884349
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2:cedd5e884349 3:e85a18371516
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="galaxy_protk" version="1.2.2">
4 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
5 </package>
3 <package name="trans_proteomic_pipeline" version="4.6.1"> 6 <package name="trans_proteomic_pipeline" version="4.6.1">
4 <install version="1.0"> 7 <install version="1.0">
5 <actions> 8 <actions>
6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> 9 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
7 <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.2.0</action> 10 <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.2.2</action>
8 <action type="move_file"> 11 <action type="move_file">
9 <source>install_tpp.sh</source> 12 <source>install_tpp.sh</source>
10 <destination>$INSTALL_DIR</destination> 13 <destination>$INSTALL_DIR</destination>
11 </action> 14 </action>
12 <action type="set_environment"> 15 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action> 18 </action>
16 </actions> 19 </actions>
17 </install> 20 </install>
18 <readme> 21 <readme>
19 Compiling the TPP requires g++ subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libgd2-dev libgd2-xpm-dev libfuse-dev libcurl4-openssl-dev
20
21 The Trans Proteomic Pipeline is a collection of proteomics tools. For more information see http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP 22 The Trans Proteomic Pipeline is a collection of proteomics tools. For more information see http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP
22 23
23 This package installs the TPP (Trans Proteomic Pipeline) using an installation script contained in protk. It requires the galaxy_protk package to be installed before it will work. 24 This package installs the TPP (Trans Proteomic Pipeline) using an installation script contained in protk. It requires the galaxy_protk package to be installed before it will work.
24 </readme> 25 </readme>
25 </package> 26 </package>