Mercurial > repos > iracooke > xtandem
comparison tandem.xml @ 18:bbef168551fe draft default tip
planemo upload for repository https://github.com/iracooke/protk-galaxytools/tree/master/xtandem commit aa789ac01391258aff7a819ebf64a7cbc46730c9
| author | galaxy-australia |
|---|---|
| date | Wed, 18 May 2022 23:50:58 +0000 |
| parents | 29e2df3edf11 |
| children |
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| 17:29e2df3edf11 | 18:bbef168551fe |
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| 162 <option value="Da">Da</option> | 162 <option value="Da">Da</option> |
| 163 </param> | 163 </param> |
| 164 <param name="allow_multi_isotope_search" type="boolean" label="Allow multi-isotope search" help="This allows peptide candidates in windows around -1 Da and -2 Da from the acquired mass to be considered. Only applicable when the minus/plus window above is set to less than 0.5 Da. Good for accurate-mass instruments for which the reported precursor mass is not corrected to the monoisotopic mass." truevalue="--multi-isotope-search" falsevalue=""/> | 164 <param name="allow_multi_isotope_search" type="boolean" label="Allow multi-isotope search" help="This allows peptide candidates in windows around -1 Da and -2 Da from the acquired mass to be considered. Only applicable when the minus/plus window above is set to less than 0.5 Da. Good for accurate-mass instruments for which the reported precursor mass is not corrected to the monoisotopic mass." truevalue="--multi-isotope-search" falsevalue=""/> |
| 165 </inputs> | 165 </inputs> |
| 166 <outputs> | 166 <outputs> |
| 167 <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.dbkey if $database.has_key('dbkey') else $database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/> | 167 <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/> |
| 168 </outputs> | 168 </outputs> |
| 169 <tests> | 169 <tests> |
| 170 <!-- Just test that the tool runs and produces vaguely correct output --> | 170 <!-- Just test that the tool runs and produces vaguely correct output --> |
| 171 <test> | 171 <test> |
| 172 <param name="source_select" value="input_ref"/> | 172 <param name="source_select" value="input_ref"/> |