Mercurial > repos > iracooke > xtandem

diff tandem.xml @ 18:bbef168551fe draft default tip

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planemo upload for repository https://github.com/iracooke/protk-galaxytools/tree/master/xtandem commit aa789ac01391258aff7a819ebf64a7cbc46730c9
author galaxy-australia
date Wed, 18 May 2022 23:50:58 +0000
parents 29e2df3edf11
children
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--- a/tandem.xml	Tue Oct 27 01:45:26 2015 -0400
+++ b/tandem.xml	Wed May 18 23:50:58 2022 +0000
@@ -164,7 +164,7 @@
         <param name="allow_multi_isotope_search" type="boolean" label="Allow multi-isotope search" help="This allows peptide candidates in windows around -1 Da and -2 Da from the acquired mass to be considered. Only applicable when the minus/plus window above is set to less than 0.5 Da. Good for accurate-mass instruments for which the reported precursor mass is not corrected to the monoisotopic mass." truevalue="--multi-isotope-search" falsevalue=""/>
     </inputs>
     <outputs>
-        <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.dbkey if $database.has_key('dbkey') else $database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/>
+        <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/>
     </outputs>
     <tests>
         <!-- Just test that the tool runs and produces vaguely correct output -->