Mercurial > repos > iracooke > xtandem
changeset 17:29e2df3edf11 draft
Check exit code
| author | iracooke |
|---|---|
| date | Tue, 27 Oct 2015 01:45:26 -0400 |
| parents | 63b15b77e56c |
| children | bbef168551fe |
| files | tandem.xml tandem_to_pepxml.xml tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 1 deletions(-) [+] |
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--- a/tandem.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tandem.xml Tue Oct 27 01:45:26 2015 -0400 @@ -5,6 +5,9 @@ <requirement type="package" version="1.4.3">protk</requirement> <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> </requirements> + <stdio> + <exit_code range="1:" level="fatal" description="Failure" /> + </stdio> <command> #if $database.source_select=="built_in": tandem_search.rb -d $database.dbkey
--- a/tandem_to_pepxml.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tandem_to_pepxml.xml Tue Oct 27 01:45:26 2015 -0400 @@ -5,6 +5,9 @@ <requirement type="package" version="1.4.3">protk</requirement> <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement> </requirements> + <stdio> + <exit_code range="1:" level="fatal" description="Failure" /> + </stdio> <command> tandem_to_pepxml.rb $input_file -o $output </command>
--- a/tool_dependencies.xml Wed Oct 21 18:08:29 2015 -0400 +++ b/tool_dependencies.xml Tue Oct 27 01:45:26 2015 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="protk" version="1.4.3"> - <repository changeset_revision="74bf855be117" name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="991797b02976" name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="trans_proteomic_pipeline" version="4.8.0"> <repository changeset_revision="a7273394d858" name="package_tpp_4_8_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />