Mercurial > repos > iuc > aldex2
annotate macros.xml @ 1:75214276e2b7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit f9acc7c5710d6eb99a883cb83b7967e6af972f1b
| author | iuc |
|---|---|
| date | Fri, 14 Jun 2024 21:21:29 +0000 |
| parents | f4d0bd4b4d6d |
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| rev | line source |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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changeset
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1 <macros> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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2 <token name="@TOOL_VERSION@">1.26.0</token> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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3 <token name="@VERSION_SUFFIX@">0</token> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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4 <token name="@PROFILE@">21.01</token> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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changeset
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5 <xml name="biotools"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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changeset
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6 <xrefs> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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changeset
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7 <xref type="bio.tools">aldex2</xref> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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8 </xrefs> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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9 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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10 <xml name="requirements"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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11 <requirements> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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12 <requirement type="package" version="@TOOL_VERSION@">bioconductor-aldex2</requirement> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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13 <requirement type="package" version="1.14.2">r-data.table</requirement> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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14 <requirement type="package" version="1.7.1">r-optparse</requirement> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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15 <requirement type="package" version="1.9.2">r-qgraph</requirement> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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16 </requirements> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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17 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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18 <xml name="aldex_test_param"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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19 <param name="aldex_test" type="select" label="Select the tests to be performed"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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20 <option value="t" selected="true">Welch's t and Wilcoxon tests</option> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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21 <option value="kw">Kruskal-Wallace and glm tests</option> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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22 <option value="corr">Correlation test</option> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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23 </param> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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24 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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25 <xml name="effect_param"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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26 <param argument="--effect" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Calculate abundances and effect sizes?" help="Used only for Welch's t and Wilcoxon tests or if performing tests iteratively"/> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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27 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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28 <xml name="include_sample_summary_param"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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29 <param argument="--include_sample_summary" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Include median clr values for each sample?"/> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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30 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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31 <xml name="iterate_param"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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32 <param argument="--iterate" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Perform tests iteratively?"/> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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33 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
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34 <xml name="sanitize_query" token_validinitial="string.printable"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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35 <sanitizer> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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36 <valid initial="@VALIDINITIAL@"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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37 <remove value="'"/> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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38 </valid> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
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39 <mapping initial="none"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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40 <add source="'" target="'"'"'"/> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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41 </mapping> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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42 </sanitizer> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
diff
changeset
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43 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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44 <xml name="citations"> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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changeset
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45 <citations> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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46 <citation type="doi">10.1371/journal.pone.0067019</citation> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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47 <citation type="doi">10.1186/2049-2618-2-15</citation> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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48 <citation type="doi">10.1080/10618600.2015.1131161</citation> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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49 </citations> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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50 </xml> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
parents:
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51 </macros> |
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f4d0bd4b4d6d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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52 |