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annotate macros.xml @ 0:f4d0bd4b4d6d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
author iuc
date Wed, 29 Jun 2022 07:36:45 +0000
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f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
iuc
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1 <macros>
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2 <token name="@TOOL_VERSION@">1.26.0</token>
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <token name="@PROFILE@">21.01</token>
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5 <xml name="biotools">
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6 <xrefs>
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7 <xref type="bio.tools">aldex2</xref>
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8 </xrefs>
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9 </xml>
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10 <xml name="requirements">
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11 <requirements>
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12 <requirement type="package" version="@TOOL_VERSION@">bioconductor-aldex2</requirement>
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13 <requirement type="package" version="1.14.2">r-data.table</requirement>
f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
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14 <requirement type="package" version="1.7.1">r-optparse</requirement>
f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
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15 <requirement type="package" version="1.9.2">r-qgraph</requirement>
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16 </requirements>
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17 </xml>
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18 <xml name="aldex_test_param">
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19 <param name="aldex_test" type="select" label="Select the tests to be performed">
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20 <option value="t" selected="true">Welch's t and Wilcoxon tests</option>
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21 <option value="kw">Kruskal-Wallace and glm tests</option>
f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
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22 <option value="corr">Correlation test</option>
f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
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23 </param>
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24 </xml>
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25 <xml name="effect_param">
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26 <param argument="--effect" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Calculate abundances and effect sizes?" help="Used only for Welch's t and Wilcoxon tests or if performing tests iteratively"/>
f4d0bd4b4d6d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60
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27 </xml>
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28 <xml name="include_sample_summary_param">
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29 <param argument="--include_sample_summary" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Include median clr values for each sample?"/>
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30 </xml>
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31 <xml name="iterate_param">
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32 <param argument="--iterate" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Perform tests iteratively?"/>
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33 </xml>
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34 <xml name="sanitize_query" token_validinitial="string.printable">
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35 <sanitizer>
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36 <valid initial="@VALIDINITIAL@">
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37 <remove value="&apos;"/>
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38 </valid>
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39 <mapping initial="none">
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40 <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;"/>
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41 </mapping>
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42 </sanitizer>
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43 </xml>
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44 <xml name="citations">
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45 <citations>
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46 <citation type="doi">10.1371/journal.pone.0067019</citation>
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47 <citation type="doi">10.1186/2049-2618-2-15</citation>
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48 <citation type="doi">10.1080/10618600.2015.1131161</citation>
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49 </citations>
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50 </xml>
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51 </macros>
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52