Mercurial > repos > iuc > bakta

annotate test-data/TEST_6/TEST_6.embl @ 4:3f0aa1b3e816 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
author iuc
date Mon, 24 Jul 2023 11:22:16 +0000
parents
children 92eee5f31117
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
1 ID contig_1; ; circular; DNA; ; PRO; 1330 BP.
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
2 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
3 AC contig_1;
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
4 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
5 DE plasmid unnamed1, complete sequence
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
6 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
7 OS .
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
8 OC .
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
9 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
10 CC Annotated with Bakta
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
11 CC Software: v1.8.1
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
12 CC Database: v5.0, full
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
13 CC DOI: 10.1099/mgen.0.000685
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
14 CC URL: github.com/oschwengers/bakta
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
15 CC
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
16 CC ##Genome Annotation Summary:##
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
17 CC Annotation Date :: 06/19/2023, 09:31:33
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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diff changeset
18 CC CDSs :: 2
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
19 CC tRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
20 CC tmRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
21 CC rRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
22 CC ncRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
23 CC regulatory ncRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
24 CC CRISPR Arrays :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
25 CC oriCs/oriVs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
26 CC oriTs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
27 CC gaps :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
28 CC pseudogenes :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
29 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
30 FH Key Location/Qualifiers
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
31 FH
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
32 FT source 1..1330
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
33 FT /mol_type="genomic DNA"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
34 FT /plasmid="unnamed1"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
35 FT gene 413..736
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
36 FT /locus_tag="IHHALP_00005"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
37 FT CDS 413..736
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
38 FT /product="hypothetical protein"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
39 FT /locus_tag="IHHALP_00005"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
40 FT /protein_id="gnl|Bakta|IHHALP_00005"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
41 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
42 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
43 FT MAD"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
44 FT /codon_start=1
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
45 FT /transl_table=11
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
46 FT /inference="ab initio prediction:Prodigal:2.6"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
47 FT gene complement(join(971..1330,1..141))
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
48 FT /locus_tag="IHHALP_00010"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
49 FT CDS complement(join(971..1330,1..141))
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
50 FT /product="hypothetical protein"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
51 FT /locus_tag="IHHALP_00010"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
52 FT /protein_id="gnl|Bakta|IHHALP_00010"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
53 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
54 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
55 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
56 FT IPI"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
57 FT /codon_start=1
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
58 FT /transl_table=11
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
59 FT /inference="ab initio prediction:Prodigal:2.6"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
60 XX
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
61 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
62 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
63 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
64 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
65 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
66 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
67 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
68 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
69 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
70 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
71 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
72 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
73 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
74 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
75 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
76 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
77 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
78 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
79 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
80 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
81 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
parents:
diff changeset
82 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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83 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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84 cttctatttg 1330
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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85 //