Mercurial > repos > iuc > beagle
comparison test-data/test_output.log @ 0:553b27c30eb8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit ccb3f8eaa99490f8513200e45fc59e5011fb41e8"
author | iuc |
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date | Sat, 03 Jul 2021 23:33:37 +0000 |
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-1:000000000000 | 0:553b27c30eb8 |
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1 beagle.21Apr21.304.jar (version 5.2) | |
2 Copyright (C) 2014-2021 Brian L. Browning | |
3 Enter "java -jar beagle.21Apr21.304.jar" to list command line argument | |
4 Start time: 08:46 PM GMT on 26 Jun 2021 | |
5 | |
6 Command line: java -Xmx989m -jar beagle.21Apr21.304.jar | |
7 gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat | |
8 chrom=22:100- | |
9 ne=1000000 | |
10 window=40.0 | |
11 overlap=2.0 | |
12 seed=1 | |
13 err=0.02 | |
14 burnin=3 | |
15 iterations=12 | |
16 phase-states=280 | |
17 impute=true | |
18 imp-states=1600 | |
19 imp-segment=6.0 | |
20 imp-step=0.1 | |
21 cluster=0.005 | |
22 ap=false | |
23 gp=false | |
24 out=out | |
25 nthreads=1 | |
26 | |
27 No genetic map is specified: using 1 cM = 1 Mb | |
28 | |
29 Reference samples: 0 | |
30 Study samples: 191 | |
31 | |
32 Window 1 [22:20000086-20016908] | |
33 Reference markers: 223 | |
34 Study markers: 223 | |
35 | |
36 Burnin iteration 1: 1 second | |
37 | |
38 Burnin iteration 2: 0 seconds | |
39 | |
40 Burnin iteration 3: 0 seconds | |
41 | |
42 Phasing iteration 1: 0 seconds | |
43 | |
44 Phasing iteration 2: 0 seconds | |
45 | |
46 Phasing iteration 3: 0 seconds | |
47 | |
48 Phasing iteration 4: 0 seconds | |
49 | |
50 Phasing iteration 5: 0 seconds | |
51 | |
52 Phasing iteration 6: 0 seconds | |
53 | |
54 Phasing iteration 7: 0 seconds | |
55 | |
56 Phasing iteration 8: 0 seconds | |
57 | |
58 Phasing iteration 9: 0 seconds | |
59 | |
60 Phasing iteration 10: 0 seconds | |
61 | |
62 Phasing iteration 11: 0 seconds | |
63 | |
64 Phasing iteration 12: 0 seconds | |
65 | |
66 Cumulative Statistics: | |
67 | |
68 Study markers: 223 | |
69 | |
70 Haplotype phasing time: 2 seconds | |
71 Total time: 3 seconds | |
72 | |
73 End time: 08:46 PM GMT on 26 Jun 2021 | |
74 beagle.21Apr21.304.jar finished |