Mercurial > repos > iuc > beagle
diff test-data/test_output.log @ 0:553b27c30eb8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit ccb3f8eaa99490f8513200e45fc59e5011fb41e8"
| author | iuc |
|---|---|
| date | Sat, 03 Jul 2021 23:33:37 +0000 |
| parents | |
| children | 563fd95fa88a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_output.log Sat Jul 03 23:33:37 2021 +0000 @@ -0,0 +1,74 @@ +beagle.21Apr21.304.jar (version 5.2) +Copyright (C) 2014-2021 Brian L. Browning +Enter "java -jar beagle.21Apr21.304.jar" to list command line argument +Start time: 08:46 PM GMT on 26 Jun 2021 + +Command line: java -Xmx989m -jar beagle.21Apr21.304.jar + gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat + chrom=22:100- + ne=1000000 + window=40.0 + overlap=2.0 + seed=1 + err=0.02 + burnin=3 + iterations=12 + phase-states=280 + impute=true + imp-states=1600 + imp-segment=6.0 + imp-step=0.1 + cluster=0.005 + ap=false + gp=false + out=out + nthreads=1 + +No genetic map is specified: using 1 cM = 1 Mb + +Reference samples: 0 +Study samples: 191 + +Window 1 [22:20000086-20016908] +Reference markers: 223 +Study markers: 223 + +Burnin iteration 1: 1 second + +Burnin iteration 2: 0 seconds + +Burnin iteration 3: 0 seconds + +Phasing iteration 1: 0 seconds + +Phasing iteration 2: 0 seconds + +Phasing iteration 3: 0 seconds + +Phasing iteration 4: 0 seconds + +Phasing iteration 5: 0 seconds + +Phasing iteration 6: 0 seconds + +Phasing iteration 7: 0 seconds + +Phasing iteration 8: 0 seconds + +Phasing iteration 9: 0 seconds + +Phasing iteration 10: 0 seconds + +Phasing iteration 11: 0 seconds + +Phasing iteration 12: 0 seconds + +Cumulative Statistics: + +Study markers: 223 + +Haplotype phasing time: 2 seconds +Total time: 3 seconds + +End time: 08:46 PM GMT on 26 Jun 2021 +beagle.21Apr21.304.jar finished
