diff test-data/test_output.log @ 0:553b27c30eb8 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit ccb3f8eaa99490f8513200e45fc59e5011fb41e8"
author iuc
date Sat, 03 Jul 2021 23:33:37 +0000
parents
children 563fd95fa88a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_output.log	Sat Jul 03 23:33:37 2021 +0000
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+beagle.21Apr21.304.jar (version 5.2)
+Copyright (C) 2014-2021 Brian L. Browning
+Enter "java -jar beagle.21Apr21.304.jar" to list command line argument
+Start time: 08:46 PM GMT on 26 Jun 2021
+
+Command line: java -Xmx989m -jar beagle.21Apr21.304.jar
+  gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat
+  chrom=22:100-
+  ne=1000000
+  window=40.0
+  overlap=2.0
+  seed=1
+  err=0.02
+  burnin=3
+  iterations=12
+  phase-states=280
+  impute=true
+  imp-states=1600
+  imp-segment=6.0
+  imp-step=0.1
+  cluster=0.005
+  ap=false
+  gp=false
+  out=out
+  nthreads=1
+
+No genetic map is specified: using 1 cM = 1 Mb
+
+Reference samples:                    0
+Study     samples:                  191
+
+Window 1 [22:20000086-20016908]
+Reference markers:                  223
+Study     markers:                  223
+
+Burnin  iteration 1:           1 second
+
+Burnin  iteration 2:           0 seconds
+
+Burnin  iteration 3:           0 seconds
+
+Phasing iteration 1:           0 seconds
+
+Phasing iteration 2:           0 seconds
+
+Phasing iteration 3:           0 seconds
+
+Phasing iteration 4:           0 seconds
+
+Phasing iteration 5:           0 seconds
+
+Phasing iteration 6:           0 seconds
+
+Phasing iteration 7:           0 seconds
+
+Phasing iteration 8:           0 seconds
+
+Phasing iteration 9:           0 seconds
+
+Phasing iteration 10:          0 seconds
+
+Phasing iteration 11:          0 seconds
+
+Phasing iteration 12:          0 seconds
+
+Cumulative Statistics:
+
+Study     markers:                  223
+
+Haplotype phasing time:        2 seconds
+Total time:                    3 seconds
+
+End time: 08:46 PM GMT on 26 Jun 2021
+beagle.21Apr21.304.jar finished