Mercurial > repos > iuc > busco

annotate macros.xml @ 23:4e70d88adf2f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
author iuc
date Fri, 04 Apr 2025 11:18:42 +0000
parents e5c372c91e46
children
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1 <?xml version="1.0"?>
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2 <macros>
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3 <token name="@TOOL_VERSION@">5.8.0</token>
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4 <token name="@VERSION_SUFFIX@">1</token>
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6 <xml name="citations">
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7 <citations>
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8 <citation type="doi">10.1093/bioinformatics/btv351</citation>
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9 </citations>
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10 </xml>
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12 <xml name="augustus_species">
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13 <!-- Update this list if you update the augustus requirement -->
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14 <!-- Consider also to update it in maker and augustus tools (../maker/maker.xml and ../augustus/augustus.xml) -->
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15 <!-- Current list for AUGUSTUS (3.5.0) for i in $(ls ~/miniforge3/envs/__busco@5.8.0/config/species/); do echo \<option value=\"$i\"\>$(echo $i | sed 's/_/ /g')\</option\>; done -->
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16 <!-- also typically mentioned in https://github.com/Gaius-Augustus/Augustus/blob/master/docs/HISTORY.TXT -->
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17 <option value="adorsata">Apis dorsata (adorsata)</option>
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18 <option value="aedes">Aedes aegypti (aedes)</option>
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19 <option value="amphimedon">Amphimedon queenslandica</option>
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20 <option value="ancylostoma_ceylanicum">Ancylostoma ceylanicum</option>
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21 <option value="anidulans">Aspergillus nidulans (anidulans)</option>
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22 <option value="Anopheles_gambiae">Anopheles gambiae</option>
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23 <option value="arabidopsis">Arabidopsis thaliana (arabidopsis)</option>
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24 <option value="Argopecten_irradians">Argopecten irradians</option>
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25 <option value="aspergillus_fumigatus">Aspergillus fumigatus</option>
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26 <option value="aspergillus_nidulans">Aspergillus nidulans</option>
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27 <option value="aspergillus_oryzae">Aspergillus oryzae</option>
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28 <option value="aspergillus_terreus">Aspergillus terreus</option>
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29 <option value="Aurelia_aurita">Aurelia aurita</option>
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30 <option value="Bathycoccus_prasinos">Bathycoccus prasinos</option>
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31 <option value="Berviolum_minutum">Berviolum minutum</option>
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32 <option value="bombus_impatiens1">Bombus impatiens1</option>
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33 <option value="bombus_terrestris2">Bombus terrestris2</option>
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34 <option value="botrytis_cinerea">Botrytis cinerea</option>
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35 <option value="b_pseudomallei">Burkholderia pseudomallei (b_pseudomallei)</option>
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36 <option value="Branchiostoma_floridae">Branchiostoma floridae</option>
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37 <option value="brugia">Brugia malayi (brugia)</option>
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38 <option value="cacao">(cacao)</option>
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39 <option value="caenorhabditis">Caenorhabditis elegans (caenorhabditis)</option>
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40 <option value="camponotus_floridanus">Camponotus floridanus</option>
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41 <option value="candida_albicans">Candida albicans</option>
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42 <option value="candida_guilliermondii">Candida guilliermondii</option>
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43 <option value="candida_tropicalis">Candida tropicalis</option>
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44 <option value="Cassiopea_xamachana">Cassiopea xamachana</option>
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45 <!-- <option value="c_elegans_trsk">Caenorhabditis elegans</option> do not use according to augustus commit messages -->
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46 <option value="chaetomium_globosum">Chaetomium globosum</option>
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47 <option value="chicken">Gallus gallus (chicken)</option>
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48 <option value="chiloscyllium">Chiloscyllium punctatum (chiloscyllium)</option>
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49 <option value="chlamy2011">chlamy2011</option>
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50 <option value="chlamydomonas">Chlamydomonas reinhardtii (chlamydomonas)</option>
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51 <option value="Chlamydomonas_eustigma">Chlamydomonas eustigma</option>
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52 <option value="chlorella">chlorella</option>
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53 <option value="Chloropicon_primus">Chloropicon primus</option>
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54 <option value="Chrysaora_chesapeakei">Chrysaora chesapeakei</option>
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55 <option value="ciona">ciona</option>
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56 <option value="coccidioides_immitis">Coccidioides immitis</option>
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57 <option value="Conidiobolus_coronatus">Conidiobolus coronatus</option>
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58 <option value="coprinus">coprinus</option>
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59 <option value="coprinus_cinereus">Coprinus cinereus</option>
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60 <option value="coyote_tobacco">Coyote tobacco</option>
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61 <option value="cryptococcus">cryptococcus</option>
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62 <option value="cryptococcus_neoformans_gattii">Cryptococcus neoformans gattii</option>
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63 <option value="cryptococcus_neoformans_neoformans_B">Cryptococcus neoformans neoformans B</option>
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64 <option value="cryptococcus_neoformans_neoformans_JEC21">Cryptococcus neoformans neoformans JEC21</option>
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65 <option value="Cryptosporidium_hominis">Cryptosporidium hominis</option>
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66 <option value="culex">culex</option>
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67 <option value="Cyclotella_cryptica">Cyclotella cryptica</option>
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68 <option value="debaryomyces_hansenii">Debaryomyces hansenii</option>
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69 <option value="Dermasterias_imbricata">Dermasterias imbricata</option>
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70 <option value="Dunaliella_salina">Dunaliella salina</option>
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71 <option value="E_coli_K12">Escherichia K12 (E_coli_K12)</option>
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72 <option value="Ectocarpus_siliculosus">Ectocarpus siliculosus</option>
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73 <option value="elephant_shark">Callorhinchus milii (elephant_shark)</option>
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74 <option value="Encephalitozoon_cuniculi">Encephalitozoon cuniculi</option>
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75 <option value="encephalitozoon_cuniculi_GB">Encephalitozoon cuniculi GB</option>
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76 <option value="eremothecium_gossypii">Eremothecium gossypii</option>
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77 <option value="Fistulifera_solaris">Fistulifera solaris</option>
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78 <option value="fly">Drosophila melanogaster (fly)</option>
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79 <option value="fly_exp">Drosophila melanogaster (fly) experimental parameters</option>
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80 <option value="Fragilariopsis_cylindrus_CCMP1102">Fragilariopsis cylindrus CCMP1102</option>
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81 <option value="fusarium">fusarium</option>
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82 <option value="fusarium_graminearum">Fusarium graminearum</option>
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4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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parents: 22
diff changeset
83 <option value="galdieria">Galdieria sulphuraria (galdieria)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
84 <option value="generic">generic</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
85 <option value="gigaspora_margarita">Gigaspora margarita</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
86 <option value="Gonapodya_prolifera">Gonapodya prolifera</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
87 <option value="heliconius_melpomene1">Heliconius melpomene1</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
88 <option value="histoplasma">histoplasma</option>
13
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iuc
parents: 12
diff changeset
89 <option value="histoplasma_capsulatum">Histoplasma capsulatum</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
90 <option value="honeybee1">Apis mellifera (honeybee1)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
91 <option value="human">Homo sapiens (human)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
92 <option value="Hydra_vulgaris">Hydra vulgaris</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
93 <option value="hymenolepis_microstoma">Hymenolepis microstoma</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
94 <option value="japaneselamprey">Lethenteron camtschaticum (japaneselamprey)</option>
13
46ae58b1d792 "planemo upload commit 2adcb199f279b9ea1c3896a1f7a5b8cd9311228b"
iuc
parents: 12
diff changeset
95 <option value="kluyveromyces_lactis">Kluyveromyces lactis</option>
46ae58b1d792 "planemo upload commit 2adcb199f279b9ea1c3896a1f7a5b8cd9311228b"
iuc
parents: 12
diff changeset
96 <option value="laccaria_bicolor">Laccaria bicolor</option>
7
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iuc
parents:
diff changeset
97 <option value="leishmania_tarentolae">Leishmania tarentolae</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
98 <option value="Leptasterias_sp">Leptasterias sp</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
99 <option value="Loa_loa">Loa loa</option>
7
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iuc
parents:
diff changeset
100 <option value="lodderomyces_elongisporus">Lodderomyces elongisporus</option>
13
46ae58b1d792 "planemo upload commit 2adcb199f279b9ea1c3896a1f7a5b8cd9311228b"
iuc
parents: 12
diff changeset
101 <option value="magnaporthe_grisea">Magnaporthe grisea</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
102 <option value="maize">Zea mays (maize)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
103 <option value="maize5">Zea mays (maize5)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
104 <option value="Micromonas_commoda">Micromonas commoda</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
105 <option value="Micromonas_pusilla">Micromonas pusilla</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
106 <option value="mnemiopsis_leidyi">Mnemiopsis leidyi</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
107 <option value="Monoraphidium_neglectum">Monoraphidium neglectum</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
108 <option value="Monosiga_brevicollis">Monosiga brevicollis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
109 <option value="Naegleria_gruberi">Naegleria gruberi</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
110 <option value="nasonia">Nasonia vitripennis (nasonia)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
111 <option value="nematostella_vectensis">Nematostella vectensis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
112 <option value="Nemopilema_nomurai">Nemopilema nomurai</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
113 <option value="neurospora">neurospora</option>
7
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iuc
parents:
diff changeset
114 <option value="neurospora_crassa">Neurospora crassa</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
115 <option value="Notospermus_geniculatus">Notospermus geniculatus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
116 <option value="Ostreococcus_sp_lucimarinus">Ostreococcus sp lucimarinus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
117 <option value="Ostreococcus_tauri">Ostreococcus tauri</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
118 <option value="Paramecium_tetraurelia">Paramecium tetraurelia</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
119 <option value="parasteatoda">Parasteatoda tepidariorum (parasteatoda)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
120 <option value="pchrysosporium">Phanerochaete chrysosporium (pchrysosporium)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
121 <option value="pea_aphid">Acyrthosiphon pisum (pea_aphid)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
122 <option value="Pediculus_humanus">Pediculus humanus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
123 <option value="Perkinsus_marinus">Perkinsus marinus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
124 <option value="pfalciparum">Plasmodium falciparum (pfalciparum)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
125 <option value="Phaeodactylum_tricornutum">Phaeodactylum tricornutum</option>
7
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents:
diff changeset
126 <option value="phanerochaete_chrysosporium">Phanerochaete chrysosporium</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
127 <option value="Physcomitrium_patens">Physcomitrium patens</option>
7
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
iuc
parents:
diff changeset
128 <option value="pichia_stipitis">Pichia stipitis</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
129 <option value="pisaster">Pisaster ochraceus (pisaster)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
130 <option value="pneumocystis">pneumocystis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
131 <option value="Populus_trichocarpa">Populus trichocarpa</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
132 <option value="Pseudo-nitzschia_multistriata">Pseudo-nitzschia multistriata</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
133 <option value="Ptychodera_flava">Ptychodera flava</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
134 <option value="Pycnopodia_helianthoides">Pycnopodia helianthoides</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
135 <option value="Raphidocelis_subcapitata">Raphidocelis subcapitata</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
136 <option value="rhincodon">Rhincodon typus (rhincodon)</option>
7
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iuc
parents:
diff changeset
137 <option value="rhizopus_oryzae">Rhizopus oryzae</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
138 <option value="rhodnius">Rhodnius</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
139 <option value="Rhopilema_esculentum">Rhopilema esculentum</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
140 <option value="rice">Oryza (rice)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
141 <option value="Ricinus_communis">Ricinus communis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
142 <option value="saccharomyces">Saccharomyces</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
143 <option value="saccharomyces_cerevisiae_rm11-1a_1">Saccharomyces cerevisiae rm11-1a 1</option>
13
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iuc
parents: 12
diff changeset
144 <option value="saccharomyces_cerevisiae_S288C">Saccharomyces cerevisiae S288C</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
145 <option value="s_aureus">Staphylococcus aureus (s_aureus)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
146 <option value="schistosoma">Schistosoma mansoni (schistosoma)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
147 <option value="schistosoma2">Schistosoma mansoni (schistosoma2)</option>
7
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iuc
parents:
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148 <option value="schizosaccharomyces_pombe">Schizosaccharomyces pombe</option>
23
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
149 <option value="Sclerotinia_sclerotiorum">Sclerotinia sclerotiorum</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
150 <option value="scyliorhinus">Scyliorhinus torazame (scyliorhinus)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
151 <option value="sealamprey">Petromyzon marinus (sealamprey)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
152 <option value="Skeletonema_costatum">Skeletonema costatum</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
153 <option value="Sordaria_macrospora">Sordaria macrospora</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
154 <option value="Sphaceloma_murrayae">Sphaceloma murrayae</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
155 <option value="s_pneumoniae">Streptococcus pneumoniae (s_pneumoniae)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
156 <option value="strongylocentrotus_purpuratus">Strongylocentrotus purpuratus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
157 <option value="sulfolobus_solfataricus">Sulfolobus solfataricus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
158 <option value="sunflower">Helianthus annuus (sunflower)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
159 <option value="Taeniopygia_guttata">Taeniopygia guttata</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
160 <option value="template_prokaryotic">Template prokaryotic</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
parents: 22
diff changeset
161 <option value="tetrahymena">tetrahymena</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
iuc
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162 <option value="Thalassiosira_pseudonana_CCMP1335">Thalassiosira pseudonana CCMP1335</option>
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163 <option value="thermoanaerobacter_tengcongensis">Thermoanaerobacter tengcongensis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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164 <option value="tomato">Solanum lycopersicum (tomato)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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165 <option value="toxoplasma">Toxoplasma gondii (toxoplasma)</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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166 <option value="tribolium2012">tribolium2012</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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167 <option value="trichinella">Trichinella</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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168 <option value="Trichoplax_adhaerens">Trichoplax adhaerens</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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169 <option value="Trypanosoma_cruzi">Trypanosoma cruzi</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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170 <option value="ustilago">Ustilago</option>
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171 <option value="ustilago_maydis">Ustilago maydis</option>
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
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172 <option value="verticillium_albo_atrum1">Verticillium albo atrum1</option>
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
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173 <option value="verticillium_longisporum1">Verticillium longisporum1</option>
23
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174 <option value="Vitis_vinifera">Vitis vinifera</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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175 <option value="Vitrella_brassicaformis">Vitrella brassicaformis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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176 <option value="volvox">volvox</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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177 <option value="wheat">wheat</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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178 <option value="Xenopus_tropicalis">Xenopus tropicalis</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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179 <option value="Xiphophorus_maculatus">Xiphophorus maculatus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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180 <option value="Xipophorus_maculatus">Xipophorus maculatus</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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181 <option value="yarrowia_lipolytica">Yarrowia lipolytica</option>
4e70d88adf2f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 68696449a909c43d0e44bc9cfc8f8945e8a9dfce
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182 <option value="zebrafish">Danio rerio (zebrafish)</option>
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183 </xml>
4048d82f0c88 "planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
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184 </macros>