Mercurial > repos > iuc > collection_column_join

annotate collection_column_join.xml @ 2:dfde09461b1e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
author iuc
date Wed, 24 May 2017 06:19:45 -0400
parents 9c8536c7ed42
children 58228a4d58fe
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dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
parents: 1
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1 <tool id="collection_column_join" name="Column Join" version="0.0.2">
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
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2 <description>on Collections</description>
0
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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3 <requirements>
2
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
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4 <requirement type="package" version="8.25">coreutils</requirement>
0
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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5 </requirements>
2
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
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6 <command detect_errors="exit_code"><![CDATA[
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
parents: 1
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7 #if 'output_shell_script' in str( $include_outputs ).split( "," ):
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
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8 cp '${collection_column_join_script}' '${script_output}' &&
0
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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9 #end if
2
dfde09461b1e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 52cb707375a11118a7e46612bd5044016abb9903
iuc
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10 sh '${collection_column_join_script}'
0
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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11 ]]>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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12 </command>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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13 <configfiles>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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14 <configfile name="collection_column_join_script"><![CDATA[
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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15 #!/bin/sh
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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16 touch header0.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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17 touch output0.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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18 #set $delimiter = '\t'
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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19 #set $left_identifier_column = $identifier_column
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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20 #set $tail_offset = int( str( $has_header ) ) + 1
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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21 #for $i, $tabular_item in enumerate( $input_tabular ):
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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22 #if $has_header:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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23 head -n ${has_header} "${tabular_item}" | awk '{ n = split(\$0,arr,"${delimiter}"); ctr=1; for(i=1;i<=n;i++){ if( i != $identifier_column ){ if( ctr > 1) {printf("${delimiter}")}; printf( "${tabular_item.element_identifier}_%s", arr[i] ); ctr++ } }; printf( "\n" ); }' > input_header.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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24 tail -n +${tail_offset} "${tabular_item}" | LC_ALL=C sort -t "${delimiter}" -k $identifier_column > input_file.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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25 #else:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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26 awk '{ n = split(\$0,arr,"${delimiter}"); ctr=1; for(i=1;i<=n;i++){ if( i != $identifier_column ){ if( ctr > 1) {printf("${delimiter}")}; printf( "${tabular_item.element_identifier}_%s", i ); ctr++ } }; exit }' "${tabular_item}" > input_header.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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27 LC_ALL=C sort -t "${delimiter}" -k $identifier_column "${tabular_item}" > input_file.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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28 #end if
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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29 #if $i == 0:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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30 mv input_file.tmp output${ ( $i + 1 ) % 2 }.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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31 #if $has_header:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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32 awk '{ printf \$${identifier_column}; exit }' "${tabular_item}" > header${ $i % 2 }.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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33 #else:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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34 echo "#KEY" > header${ $i % 2 }.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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35 #end if
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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36 #else:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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37 LC_ALL=C join -o auto -a 1 -a 2 -1 ${left_identifier_column} -2 ${identifier_column} -t "${delimiter}" -e "${fill_char}" output${ $i % 2 }.tmp input_file.tmp > output${ ( $i + 1 ) % 2 }.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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38 #set $left_identifier_column = 1
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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39 #end if
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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40 paste -d "${delimiter}" header${ $i % 2 }.tmp input_header.tmp > header${ ( $i + 1 ) % 2 }.tmp &&
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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41 #end for
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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42 cat header${ ( $i + 1 ) % 2 }.tmp output${ ( $i + 1 ) % 2 }.tmp > "${tabular_output}"
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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43 ]]>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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44 </configfile>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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45 </configfiles>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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46 <inputs>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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47 <param name="input_tabular" type="data" format="tabular" multiple="True" optional="False" label="Tabular files"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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48 <!-- <param name="identifier_column" type="data_column" data_ref="input_tabular" value="0" min="0" optional="False" label="Identifier column"/> -->
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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49 <param name="identifier_column" type="integer" value="1" min="0" optional="False" label="Identifier column"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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50 <param name="has_header" type="integer" value="0" min="0" optional="False" label="Number of Header lines in each item"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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51 <param name="fill_char" type="text" value="." optional="False" label="Fill character"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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52 <param name="include_outputs" type="select" multiple="True" label="Additional datasets to create">
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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53 <option value="output_shell_script" selected="false">Shell script</option>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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54 </param>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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55 </inputs>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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56 <outputs>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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57 <data format="tabular" name="tabular_output"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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58 <data format="txt" name="script_output">
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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59 <filter>include_outputs and "output_shell_script" in include_outputs</filter>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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60 </data>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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61 </outputs>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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62 <tests>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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63 <test>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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64 <param name="input_tabular" value="in_1.tabular,in_2.tabular,in_3.tabular" ftype="tabular"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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65 <param name="identifier_column" value="1"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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66 <param name="has_header" value="1"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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67 <param name="fill_char" value="."/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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68 <param name="include_outputs" />
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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69 <output name="tabular_output" file="out_1.tabular" ftype="tabular"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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70 </test>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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71 <test>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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72 <param name="input_tabular" value="in_1_headerless.tabular,in_2_headerless.tabular,in_3_headerless.tabular" ftype="tabular"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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73 <param name="identifier_column" value="1"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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74 <param name="has_header" value="0"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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75 <param name="fill_char" value="."/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
iuc
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76 <param name="include_outputs" />
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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77 <output name="tabular_output" file="out_2.tabular" ftype="tabular"/>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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78 </test>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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79 </tests>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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80 <help>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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81 <![CDATA[
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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82 Joins lists of tabular datasets together on a field.
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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83
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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84 -----
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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85
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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86 **Example**
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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87
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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88 To join three files, with headers, based on the first column:
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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89
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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90 **First file (in_1.tabular)**::
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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91
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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92 #KEY c2 c3 c4
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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93 one 1-1 1-2 1-3
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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94 two 1-4 1-5 1-6
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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95 three 1-7 1-8 1-9
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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96
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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97
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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98 **Second File (in_2.tabular)**::
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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99
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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100 #KEY c2 c3 c4
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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101 one 2-1 2-2 2-3
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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102 two 2-4 2-5 2-6
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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103 three 2-7 2-8 2-9
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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104
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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105 **Third file (in_3.tabular)**::
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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106
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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107 #KEY c2 c3 c4
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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108 one 3-3 3-2 3-3
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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109 two 3-4 3-5 3-6
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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110 three 3-7 3-8 3-9
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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111
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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112
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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113 **Joining** the files, using **identifier column of 1** and a **header lines of 1**, will return::
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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114
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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115 #KEY in_1.tabular_c2 in_1.tabular_c3 in_1.tabular_c4 in_2.tabular_c2 in_2.tabular_c3 in_2.tabular_c4 in_3.tabular_c2 in_3.tabular_c3 in_3.tabular_c4
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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116 one 1-1 1-2 1-3 2-1 2-2 2-3 3-3 3-2 3-3
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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117 three 1-7 1-8 1-9 2-7 2-8 2-9 3-7 3-8 3-9
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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118 two 1-4 1-5 1-6 2-4 2-5 2-6 3-4 3-5 3-6
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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119
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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120 ]]>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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121 </help>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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122 <citations>
2f120a5c49b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit 3b918f5a99ea13ec5acc7cc5fdd310fadb773ac0
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123 </citations>
1
9c8536c7ed42 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join commit d46d41c5fec10407bd6b5cb77a11d9b43b82b95e
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124 </tool>