Mercurial > repos > iuc > data_manager_metaphlan_database_downloader

comparison data_manager/data_manager_metaphlan_download.xml @ 0:169b08c9713c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author iuc
date Mon, 19 Apr 2021 20:54:06 +0000
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children 9c43baa60906
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-1:000000000000 0:169b08c9713c
1 <tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
5 </requirements>
6 <macros>
7 <token name="@TOOL_VERSION@">3.0.7</token>
8 <token name="@VERSION_SUFFIX@">0</token>
9 </macros>
10 <stdio>
11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
12 <exit_code range="1:" level="fatal" description="Error" />
13 </stdio>
14 <command><![CDATA[
15 python '$__tool_directory__/data_manager_metaphlan_download.py'
16 --index '$index'
17 --json '$out_file'
18 ]]></command>
19 <inputs>
20 <param name="index" type="select" label="Version">
21 <option value="mpa_v30_CHOCOPhlAn_201901" selected="true">mpa_v30_CHOCOPhlAn_201901</option>
22 </param>
23 </inputs>
24 <outputs>
25 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
26 </outputs>
27 <tests>
28 </tests>
29 <help><![CDATA[
30 This tool downloads and builds the MetaPhlAn databases.
31 ]]></help>
32 <citations>
33 <citation type="doi">1101/2020.11.19.388223</citation>
34 <yield />
35 </citations>
36 </tool>