Mercurial > repos > iuc > data_manager_metaphlan_database_downloader

diff data_manager/data_manager_metaphlan_download.xml @ 0:169b08c9713c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author iuc
date Mon, 19 Apr 2021 20:54:06 +0000
parents
children 9c43baa60906
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_metaphlan_download.xml	Mon Apr 19 20:54:06 2021 +0000
@@ -0,0 +1,36 @@
+<tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01">
+    <description></description>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
+    </requirements>
+    <macros>
+        <token name="@TOOL_VERSION@">3.0.7</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+    </macros>
+    <stdio>
+        <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
+        <exit_code range="1:" level="fatal" description="Error" />
+    </stdio>
+    <command><![CDATA[
+python '$__tool_directory__/data_manager_metaphlan_download.py'
+    --index '$index'
+    --json '$out_file'
+    ]]></command>
+    <inputs>
+        <param name="index" type="select" label="Version">
+            <option value="mpa_v30_CHOCOPhlAn_201901" selected="true">mpa_v30_CHOCOPhlAn_201901</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json" label="${tool.name}"/>
+    </outputs>
+    <tests>
+    </tests>
+    <help><![CDATA[
+This tool downloads and builds the MetaPhlAn databases.
+    ]]></help>
+    <citations>
+        <citation type="doi">1101/2020.11.19.388223</citation>
+        <yield />
+    </citations>
+</tool>