Mercurial > repos > iuc > data_manager_selection_background
annotate data_manager/data_manager_selection_background.xml @ 3:10ac95ec81d9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
author | iuc |
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date | Wed, 25 Aug 2021 21:07:59 +0000 |
parents | e4f07770b340 |
children | 3f0af6aa8667 |
rev | line source |
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0
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
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1 <?xml version="1.0"?> |
3
10ac95ec81d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
iuc
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2 <tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.3"> |
0
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
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3 <description>for selection analysis</description> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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4 <command detect_errors="exit_code"> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
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5 <![CDATA[ |
3
10ac95ec81d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
iuc
parents:
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6 python '$__tool_directory__/data_manager_selection_background.py' --output '$selection_background_json' |
10ac95ec81d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
iuc
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7 #if $dbkey: |
10ac95ec81d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
iuc
parents:
2
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8 --dbkey '${dbkey}' |
10ac95ec81d9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
iuc
parents:
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9 #end if |
0
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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10 --label '${label}' |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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11 #if $data_source.source_selector == 'history': |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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12 --dataset '$data_source.dataset' |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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13 #else: |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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14 --uri '$data_source.uri' |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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15 #end if |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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16 ]]> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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17 </command> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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18 <inputs> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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19 <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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20 <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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21 <conditional name="data_source"> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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22 <param name="source_selector" type="select" label="Source for the data"> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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23 <option value="uri">URL download</option> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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24 <option value="history">Use a history dataset</option> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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25 </param> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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26 <when value="uri"> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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27 <param argument="--uri" type="text" label="URI for the sequences" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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28 </when> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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29 <when value="history"> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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30 <param argument="--dataset" type="data" format="fasta" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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31 </when> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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32 </conditional> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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33 </inputs> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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34 <outputs> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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35 <data format="data_manager_json" name="selection_background_json" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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36 </outputs> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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37 <tests> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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38 <test> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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39 <param name="dbkey" value="CoV2-ORF6" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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40 <param name="label" value="SARS-CoV-2: ORF6" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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41 <param name="source_selector" value="history" /> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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42 <param name="dataset" value="selection-in1.fa" /> |
2
e4f07770b340
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit f3390425582c26c4018eb13eb0f8f2a85189ce08"
iuc
parents:
0
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43 <output name="selection_background_json" file="selection-out1.json" /> |
0
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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44 </test> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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45 </tests> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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46 <help> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
parents:
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47 </help> |
bb5794942b5e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
iuc
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48 </tool> |