Mercurial > repos > iuc > data_manager_selection_background

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
author iuc
date Tue, 21 May 2024 07:36:47 +0000
parents 10ac95ec81d9
children
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bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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1 <?xml version="1.0"?>
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3f0af6aa8667 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
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2 <tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.4" profile="23.0">
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bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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3 <description>for selection analysis</description>
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3f0af6aa8667 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
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4 <requirements>
3f0af6aa8667 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
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5 <requirement type="package" version="3.8.3">python</requirement>
3f0af6aa8667 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
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6 </requirements>
3f0af6aa8667 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit a54e50916ebdb0858b049cdc549a43df801e1a71
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7
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bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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8 <command detect_errors="exit_code">
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9 <![CDATA[
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10 python '$__tool_directory__/data_manager_selection_background.py' --output '$selection_background_json'
10ac95ec81d9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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11 #if $dbkey:
10ac95ec81d9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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12 --dbkey '${dbkey}'
10ac95ec81d9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit bbba39ae993250a1e7301965b03c12621513775e"
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13 #end if
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bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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14 --label '${label}'
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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15 #if $data_source.source_selector == 'history':
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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16 --dataset '$data_source.dataset'
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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17 #else:
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18 --uri '$data_source.uri'
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19 #end if
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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20 ]]>
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21 </command>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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22 <inputs>
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23 <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" />
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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24 <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" />
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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25 <conditional name="data_source">
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26 <param name="source_selector" type="select" label="Source for the data">
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27 <option value="uri">URL download</option>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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28 <option value="history">Use a history dataset</option>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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29 </param>
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30 <when value="uri">
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31 <param argument="--uri" type="text" label="URI for the sequences" />
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32 </when>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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33 <when value="history">
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34 <param argument="--dataset" type="data" format="fasta" />
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35 </when>
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36 </conditional>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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37 </inputs>
bb5794942b5e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
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38 <outputs>
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39 <data format="data_manager_json" name="selection_background_json" />
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40 </outputs>
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41 <tests>
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42 <test>
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43 <param name="dbkey" value="CoV2-ORF6" />
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44 <param name="label" value="SARS-CoV-2: ORF6" />
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45 <param name="source_selector" value="history" />
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46 <param name="dataset" value="selection-in1.fa" />
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47 <output name="selection_background_json" file="selection-out1.json" />
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48 </test>
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49 </tests>
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50 <help>
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51 </help>
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52 </tool>