Mercurial > repos > iuc > data_manager_snpeff
annotate data_manager_conf.xml @ 2:984733fcab49 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_snpeff commit 47cd0cc3b680295e6bea84acc89f18c79b6d3f0c
| author | iuc |
|---|---|
| date | Tue, 07 Jun 2016 15:44:15 -0400 |
| parents | 9ac823a8b328 |
| children | 3d9dd4b9fb09 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <data_managers> | |
| 3 <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > | |
| 4 <data_table name="snpeffv_databases"> <!-- Defines a Data Table to be modified. --> | |
| 5 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 6 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 7 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 8 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 9 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 10 </output> | |
| 11 </data_table> | |
| 12 </data_manager> | |
| 13 <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > | |
| 14 <data_table name="snpeffv_genomedb"> <!-- Defines a Data Table to be modified. --> | |
| 15 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 16 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 17 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 18 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 19 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 20 <column name="path" output_ref="out_file" > | |
| 21 <move type="directory" relativize_symlinks="True"> | |
|
2
984733fcab49
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_snpeff commit 47cd0cc3b680295e6bea84acc89f18c79b6d3f0c
iuc
parents:
0
diff
changeset
|
22 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/v4_1/data</target> |
| 0 | 23 </move> |
|
2
984733fcab49
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_snpeff commit 47cd0cc3b680295e6bea84acc89f18c79b6d3f0c
iuc
parents:
0
diff
changeset
|
24 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/v4_1/data</value_translation> |
| 0 | 25 <value_translation type="function">abspath</value_translation> |
| 26 </column> | |
| 27 </output> | |
| 28 </data_table> | |
| 29 <data_table name="snpeffv_regulationdb"> <!-- Defines a Data Table to be modified. --> | |
| 30 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 31 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 32 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 33 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 34 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 35 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 36 </output> | |
| 37 </data_table> | |
| 38 <data_table name="snpeffv_annotations"> <!-- Defines a Data Table to be modified. --> | |
| 39 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 40 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 41 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 42 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 43 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 44 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 45 </output> | |
| 46 </data_table> | |
| 47 </data_manager> | |
| 48 </data_managers> | |
| 49 | |
| 50 |