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comparison README.rst @ 10:480d9e9d156b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit dccd4c0668ec8ce1b1c8fd9cef4dcf3a99dc78b3
author iuc
date Fri, 27 Oct 2023 19:44:40 +0000
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9:a62c4a11a67d 10:480d9e9d156b
1 ENA-upload-cli wrapper
2 ======================
3
4 Galaxy wrapper of the
5 `ena-upload-cli <https://github.com/usegalaxy-eu/ena-upload-cli>`__.
6 Templates that can be used in as input for the metadata can be found
7 `here <https://github.com/ELIXIR-Belgium/ENA-metadata-templates>`__
8
9 This tool is shipped in a ready to use Galaxy container found
10 `here <https://github.com/ELIXIR-Belgium/ena-upload-container>`__.
11
12 Setting up credentials on Galaxy
13 --------------------------------
14
15 The admin of the server can set up global credentials through a file
16 with the format:
17
18 .. code-block:: yaml
19
20 username: webin_id
21 password: webin_password
22
23 The path to this file must be exported as an environment variable called
24 $GALAXY_ENA_SECRETS
25
26 Alternatively, the admin can enable users to set their own credentials
27 for this tool. To enable it, make sure the file
28 ``config/user_preferences_extra_conf.yml`` has the following section:
29
30 .. code-block:: yaml
31
32 ena_webin_account:
33 description: Your ENA Webin account details
34 inputs:
35 - name: webin_id
36 label: ENA Webin ID
37 type: text
38 required: False
39 - name: password
40 label: Password
41 type: password
42 required: False