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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk2 commit cf399638ebca4250bcc15f468238a9964de97b33
author iuc
date Mon, 04 Jun 2018 05:38:15 -0400
parents 340633249b3d
children
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GenomeAnalysisEngine - Strictness is SILENT
TableRecalibrationWalker - Reading in the data from input csv file...
TableRecalibrationWalker - ...done!
TableRecalibrationWalker - The covariates being used here:
TableRecalibrationWalker - 	ReadGroupCovariate
TableRecalibrationWalker - 	QualityScoreCovariate
TableRecalibrationWalker - 	CycleCovariate
TableRecalibrationWalker - 	DinucCovariate
TableRecalibrationWalker - 	HomopolymerCovariate
TableRecalibrationWalker - 	MinimumNQSCovariate
TableRecalibrationWalker - 	PositionCovariate
TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation...
TableRecalibrationWalker - ...done!
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
TraversalEngine - Total runtime
TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)