Mercurial > repos > iuc > gatk2
view test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 0:340633249b3d draft
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author | bgruening |
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date | Mon, 02 Dec 2013 06:18:36 -0500 |
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GenomeAnalysisEngine - Strictness is SILENT TableRecalibrationWalker - Reading in the data from input csv file... TableRecalibrationWalker - ...done! TableRecalibrationWalker - The covariates being used here: TableRecalibrationWalker - ReadGroupCovariate TableRecalibrationWalker - QualityScoreCovariate TableRecalibrationWalker - CycleCovariate TableRecalibrationWalker - DinucCovariate TableRecalibrationWalker - HomopolymerCovariate TableRecalibrationWalker - MinimumNQSCovariate TableRecalibrationWalker - PositionCovariate TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation... TableRecalibrationWalker - ...done! TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] TraversalEngine - Total runtime TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)