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annotate test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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1 GenomeAnalysisEngine - Strictness is SILENT
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2 TableRecalibrationWalker - Reading in the data from input csv file...
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3 TableRecalibrationWalker - ...done!
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4 TableRecalibrationWalker - The covariates being used here:
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5 TableRecalibrationWalker - ReadGroupCovariate
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6 TableRecalibrationWalker - QualityScoreCovariate
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7 TableRecalibrationWalker - CycleCovariate
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8 TableRecalibrationWalker - DinucCovariate
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9 TableRecalibrationWalker - HomopolymerCovariate
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10 TableRecalibrationWalker - MinimumNQSCovariate
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11 TableRecalibrationWalker - PositionCovariate
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12 TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation...
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13 TableRecalibrationWalker - ...done!
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14 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
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15 TraversalEngine - Total runtime
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16 TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)