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diff test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains	Mon Dec 02 06:18:36 2013 -0500
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+GenomeAnalysisEngine - Strictness is SILENT
+TableRecalibrationWalker - Reading in the data from input csv file...
+TableRecalibrationWalker - ...done!
+TableRecalibrationWalker - The covariates being used here:
+TableRecalibrationWalker - 	ReadGroupCovariate
+TableRecalibrationWalker - 	QualityScoreCovariate
+TableRecalibrationWalker - 	CycleCovariate
+TableRecalibrationWalker - 	DinucCovariate
+TableRecalibrationWalker - 	HomopolymerCovariate
+TableRecalibrationWalker - 	MinimumNQSCovariate
+TableRecalibrationWalker - 	PositionCovariate
+TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation...
+TableRecalibrationWalker - ...done!
+TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
+TraversalEngine - Total runtime
+TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)
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