Mercurial > repos > iuc > gff_to_prot
comparison convert_gff.xml @ 0:99810cf51f2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
| author | iuc |
|---|---|
| date | Mon, 22 Apr 2019 14:42:21 -0400 |
| parents | |
| children | 2aea122fbd25 |
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| -1:000000000000 | 0:99810cf51f2e |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="gff_to_prot" name="Convert GFF3" version="1.0.0"> | |
| 3 <description>to prot_table for TRANSIT</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command> | |
| 8 <inputs> | |
| 9 <param name="input" type="data" format="gff3" label="GenBank GFF file" /> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data name="output" format="tabular" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" /> | |
| 17 <output name="output" file="gff_to_prot-out1.txt" /> | |
| 18 </test> | |
| 19 </tests> | |
| 20 | |
| 21 <help> | |
| 22 <![CDATA[ | |
| 23 .. class:: infomark | |
| 24 | |
| 25 | |
| 26 **What it does** | |
| 27 | |
| 28 ------------------- | |
| 29 | |
| 30 Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools. | |
| 31 | |
| 32 ]]></help> | |
| 33 <expand macro="citations" /> | |
| 34 | |
| 35 </tool> |