Mercurial > repos > iuc > gff_to_prot

diff convert_gff.xml @ 0:99810cf51f2e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
author iuc
date Mon, 22 Apr 2019 14:42:21 -0400
parents
children 2aea122fbd25
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/convert_gff.xml	Mon Apr 22 14:42:21 2019 -0400
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+<?xml version="1.0"?>
+<tool id="gff_to_prot" name="Convert GFF3" version="1.0.0">
+    <description>to prot_table for TRANSIT</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command>
+    <inputs>
+        <param name="input" type="data" format="gff3" label="GenBank GFF file" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" />
+            <output name="output" file="gff_to_prot-out1.txt" />
+        </test>
+    </tests>
+
+    <help>
+<![CDATA[
+.. class:: infomark
+
+
+**What it does**
+
+-------------------
+
+Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.
+
+]]></help>
+    <expand macro="citations" />
+
+</tool>