<?xml version="1.0"?>
<tool id="gff_to_prot" name="Convert GFF3" version="1.0.0">
    <description>to prot_table for TRANSIT</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command>
    <inputs>
        <param name="input" type="data" format="gff3" label="GenBank GFF file" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" />
            <output name="output" file="gff_to_prot-out1.txt" />
        </test>
    </tests>

    <help>
<![CDATA[
.. class:: infomark


**What it does**

-------------------

Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools.

]]></help>
    <expand macro="citations" />

</tool>