Mercurial > repos > iuc > gff_to_prot
diff convert_gff.xml @ 0:99810cf51f2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 73c6b2baf9dda26c6809a4f36582f7cbdb161ea1
author | iuc |
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date | Mon, 22 Apr 2019 14:42:21 -0400 |
parents | |
children | 2aea122fbd25 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_gff.xml Mon Apr 22 14:42:21 2019 -0400 @@ -0,0 +1,35 @@ +<?xml version="1.0"?> +<tool id="gff_to_prot" name="Convert GFF3" version="1.0.0"> + <description>to prot_table for TRANSIT</description> + <macros> + <import>macros.xml</import> + </macros> + <command detect_errors="exit_code">$__tool_directory__/gff_to_prot.py '$input' '$output'</command> + <inputs> + <param name="input" type="data" format="gff3" label="GenBank GFF file" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + <tests> + <test> + <param name="input" ftype="gff3" value="gff_to_prot-in1.gff3" /> + <output name="output" file="gff_to_prot-out1.txt" /> + </test> + </tests> + + <help> +<![CDATA[ +.. class:: infomark + + +**What it does** + +------------------- + +Convert Gff3 files coming from Genbank in prot_table file that can be used as an input for TRANSIT tools. + +]]></help> + <expand macro="citations" /> + +</tool>