Mercurial > repos > iuc > gtdbtk_classify_wf

annotate test-data/gtdbtk_database.loc @ 4:65d52c693b8e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 94a1996b09d7597793f823307cbac6208e20f1d1
author iuc
date Fri, 01 Mar 2024 07:19:45 +0000
parents c4db8c4de66f
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c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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1 # This is a sample file distributed with Galaxy that enables tools
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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2 # to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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3 # file has this format (longer white space characters are TAB characters):
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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4 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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5 # <unique_build_id> <display_name> <directory_path>
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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6 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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7 # So, for example, if you have the gtdbtk 202 stored in
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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8 # /depot/data2/galaxy/gtdbtk/202/,
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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9 # then the gtdbtk_databases.loc entry would look like this:
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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10 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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11 # release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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12 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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13 # and your /depot/data2/galaxy/gtdbtk/release202 directory
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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14 # would contain GTDB-Tk database files for release 202, sommething like this:
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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15 #
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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16 #drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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17 #-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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18 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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19 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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20 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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21 #drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
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22 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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23 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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24 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/
c4db8c4de66f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 8487d2c73793be0afa5b34388b122e686ac8a094
iuc
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25 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/
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65d52c693b8e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 94a1996b09d7597793f823307cbac6208e20f1d1
iuc
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26 gtdbtk214 GTDB-Tk database v214 ${__HERE__}/gtdbtk214/