Mercurial > repos > iuc > hmmer_jackhmmer
comparison test-data/uniprot_globins_match.out @ 4:793967b6ae8a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author | iuc |
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date | Mon, 11 Jun 2018 15:51:14 -0400 |
parents | b23fd24e45a3 |
children | 5113c71c7031 |
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3:036df14999e8 | 4:793967b6ae8a |
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1 # hmmsearch :: search profile(s) against a sequence database | 1 # hmmsearch :: search profile(s) against a sequence database |
2 # HMMER 3.1b2 (February 2015); http://hmmer.org/ | 2 # HMMER 3.2 (June 2018); http://hmmer.org/ |
3 # Copyright (C) 2015 Howard Hughes Medical Institute. | 3 # Copyright (C) 2018 Howard Hughes Medical Institute. |
4 # Freely distributed under the GNU General Public License (GPLv3). | 4 # Freely distributed under the BSD open source license. |
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
6 # query HMM file: /tmp/tmpJW6ntL/files/000/dataset_1.dat | 6 # query HMM file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat |
7 # target sequence database: /tmp/tmpJW6ntL/files/000/dataset_2.dat | 7 # target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_26.dat |
8 # per-seq hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_4.dat | 8 # per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_28.dat |
9 # per-dom hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_5.dat | 9 # per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_29.dat |
10 # pfam-style tabular hit output: /tmp/tmpJW6ntL/files/000/dataset_6.dat | 10 # pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_30.dat |
11 # max ASCII text line length: unlimited | 11 # max ASCII text line length: unlimited |
12 # Vit filter P threshold: <= 0.001 | 12 # Vit filter P threshold: <= 0.001 |
13 # Fwd filter P threshold: <= 1e-05 | 13 # Fwd filter P threshold: <= 1e-05 |
14 # random number seed set to: 4 | 14 # random number seed set to: 4 |
15 # number of worker threads: 1 | 15 # number of worker threads: 1 |
16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
17 | 17 |
18 Query: globins4 [M=149] | 18 Query: dataset_x [M=149] |
19 Scores for complete sequences (score includes all domains): | 19 Scores for complete sequences (score includes all domains): |
20 --- full sequence --- --- best 1 domain --- -#dom- | 20 --- full sequence --- --- best 1 domain --- -#dom- |
21 E-value score bias E-value score bias exp N Sequence Description | 21 E-value score bias E-value score bias exp N Sequence Description |
22 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- | 22 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- |
23 1.8e-70 222.7 3.2 2e-70 222.6 3.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 | 23 1.8e-70 222.7 3.2 2e-70 222.6 3.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
30 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- | 30 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
31 1 ! 222.6 3.2 2e-70 2e-70 2 149 .] 2 148 .. 1 148 [. 0.99 | 31 1 ! 222.6 3.2 2e-70 2e-70 2 149 .] 2 148 .. 1 148 [. 0.99 |
32 | 32 |
33 Alignments for each domain: | 33 Alignments for each domain: |
34 == domain 1 score: 222.6 bits; conditional E-value: 2e-70 | 34 == domain 1 score: 222.6 bits; conditional E-value: 2e-70 |
35 globins4 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 | 35 dataset_x 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 |
36 vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk | 36 vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk |
37 sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 | 37 sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 |
38 8*****************************************************************************.99******************************************************************7 PP | 38 8*****************************************************************************.99******************************************************************7 PP |
39 | 39 |
40 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 | 40 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
42 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- | 42 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- |
43 1 ! 217.0 0.1 1e-68 1e-68 1 149 [] 2 147 .] 2 147 .] 0.99 | 43 1 ! 217.0 0.1 1e-68 1e-68 1 149 [] 2 147 .] 2 147 .] 0.99 |
44 | 44 |
45 Alignments for each domain: | 45 Alignments for each domain: |
46 == domain 1 score: 217.0 bits; conditional E-value: 1e-68 | 46 == domain 1 score: 217.0 bits; conditional E-value: 1e-68 |
47 globins4 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 | 47 dataset_x 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 |
48 v+L+++ek++v+a+W+kv +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+ | 48 v+L+++ek++v+a+W+kv +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+ |
49 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 | 49 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 |
50 69****************..*************************************************************.******************************************************************7 PP | 50 69****************..*************************************************************.******************************************************************7 PP |
51 | 51 |
52 | 52 |
53 | 53 |
54 Internal pipeline statistics summary: | 54 Internal pipeline statistics summary: |
55 ------------------------------------- | 55 ------------------------------------- |
56 Query model(s): 1 (149 nodes) | 56 Query model(s): 1 (149 nodes) |
57 Target sequences: 2 (301 residues searched) | 57 Target sequences: 2 (301 residues searched) |
58 Passed MSV filter: 2 (1); expected 0.0 (0.02) | 58 Passed MSV filter: 2 (1); expected 0.0 (0.02) |
59 Passed bias filter: 2 (1); expected 0.0 (0.02) | 59 Passed bias filter: 2 (1); expected 0.0 (0.02) |
60 Passed Vit filter: 2 (1); expected 0.0 (0.001) | 60 Passed Vit filter: 2 (1); expected 0.0 (0.001) |
61 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) | 61 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) |
62 Initial search space (Z): 2 [actual number of targets] | 62 Initial search space (Z): 2 [actual number of targets] |
63 Domain search space (domZ): 2 [number of targets reported over threshold] | 63 Domain search space (domZ): 2 [number of targets reported over threshold] |
64 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 | 64 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 |
65 # Mc/sec: inf | 65 # Mc/sec: 20.02 |
66 // | 66 // |
67 [ok] | 67 [ok] |