Mercurial > repos > iuc > hmmer_jackhmmer
diff test-data/uniprot_globins_match.out @ 4:793967b6ae8a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author | iuc |
---|---|
date | Mon, 11 Jun 2018 15:51:14 -0400 |
parents | b23fd24e45a3 |
children | 5113c71c7031 |
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--- a/test-data/uniprot_globins_match.out Sat Apr 07 03:48:57 2018 -0400 +++ b/test-data/uniprot_globins_match.out Mon Jun 11 15:51:14 2018 -0400 @@ -1,13 +1,13 @@ # hmmsearch :: search profile(s) against a sequence database -# HMMER 3.1b2 (February 2015); http://hmmer.org/ -# Copyright (C) 2015 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query HMM file: /tmp/tmpJW6ntL/files/000/dataset_1.dat -# target sequence database: /tmp/tmpJW6ntL/files/000/dataset_2.dat -# per-seq hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_4.dat -# per-dom hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_5.dat -# pfam-style tabular hit output: /tmp/tmpJW6ntL/files/000/dataset_6.dat +# query HMM file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat +# target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_28.dat +# per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_29.dat +# pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_30.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 @@ -15,7 +15,7 @@ # number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Query: globins4 [M=149] +Query: dataset_x [M=149] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description @@ -32,7 +32,7 @@ Alignments for each domain: == domain 1 score: 222.6 bits; conditional E-value: 2e-70 - globins4 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 + dataset_x 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 8*****************************************************************************.99******************************************************************7 PP @@ -44,7 +44,7 @@ Alignments for each domain: == domain 1 score: 217.0 bits; conditional E-value: 1e-68 - globins4 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 + dataset_x 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 v+L+++ek++v+a+W+kv +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+ sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 69****************..*************************************************************.******************************************************************7 PP @@ -53,8 +53,8 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (149 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (149 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) @@ -62,6 +62,6 @@ Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 -# Mc/sec: inf +# Mc/sec: 20.02 // [ok]