Mercurial > repos > iuc > humann2

diff humann2.xml @ 5:bb13650e8115 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"
author iuc
date Fri, 05 Feb 2021 18:28:51 +0000
parents 019864881779
children cda49fede0c2
line wrap: on
line diff
--- a/humann2.xml	Mon Feb 01 18:17:35 2021 +0000
+++ b/humann2.xml	Fri Feb 05 18:28:51 2021 +0000
@@ -1,12 +1,10 @@
-<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.1">
+<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.2">
     <description>to profile presence/absence and abundance of microbial pathways and gene families</description>
     <macros>
         <import>humann2_macros.xml</import>
     </macros>
-    <stdio>
-        <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" />
-    </stdio>
-    <expand macro="requirements">        
+    <expand macro="stdio"/>
+    <expand macro="requirements">
         <requirement type="package" version="2.3.0">bowtie2</requirement>
         <requirement type="package" version="2.6.0">metaphlan2</requirement>
         <requirement type="package" version="0.8.24">diamond</requirement>