Mercurial > repos > iuc > humann2
changeset 5:bb13650e8115 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40"
| author | iuc |
|---|---|
| date | Fri, 05 Feb 2021 18:28:51 +0000 |
| parents | 019864881779 |
| children | cda49fede0c2 |
| files | humann2.xml humann2_macros.xml |
| diffstat | 2 files changed, 10 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/humann2.xml Mon Feb 01 18:17:35 2021 +0000 +++ b/humann2.xml Fri Feb 05 18:28:51 2021 +0000 @@ -1,12 +1,10 @@ -<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.1"> +<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.2"> <description>to profile presence/absence and abundance of microbial pathways and gene families</description> <macros> <import>humann2_macros.xml</import> </macros> - <stdio> - <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> - </stdio> - <expand macro="requirements"> + <expand macro="stdio"/> + <expand macro="requirements"> <requirement type="package" version="2.3.0">bowtie2</requirement> <requirement type="package" version="2.6.0">metaphlan2</requirement> <requirement type="package" version="0.8.24">diamond</requirement>
--- a/humann2_macros.xml Mon Feb 01 18:17:35 2021 +0000 +++ b/humann2_macros.xml Fri Feb 05 18:28:51 2021 +0000 @@ -7,6 +7,13 @@ <yield/> </requirements> </xml> + + <xml name="stdio"> + <stdio> + <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + </stdio> + </xml> <xml name="version"> <version_command>humann2 --version</version_command> </xml>