Mercurial > repos > iuc > humann2

changeset 4:019864881779 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 52d835f027b052a0a887be14a55faf9fa9e456ae"
author iuc
date Mon, 01 Feb 2021 18:17:35 +0000
parents b168c0ef3c14
children bb13650e8115
files humann2.xml repository_dependencies.xml
diffstat 2 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/humann2.xml	Sat Jan 25 18:25:32 2020 -0500
+++ b/humann2.xml	Mon Feb 01 18:17:35 2021 +0000
@@ -1,8 +1,11 @@
-<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.0">
+<tool id="humann2" name="HUMAnN2" version="@WRAPPER_VERSION@.1">
     <description>to profile presence/absence and abundance of microbial pathways and gene families</description>
     <macros>
         <import>humann2_macros.xml</import>
     </macros>
+    <stdio>
+        <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" />
+    </stdio>
     <expand macro="requirements">        
         <requirement type="package" version="2.3.0">bowtie2</requirement>
         <requirement type="package" version="2.6.0">metaphlan2</requirement>
--- a/repository_dependencies.xml	Sat Jan 25 18:25:32 2020 -0500
+++ b/repository_dependencies.xml	Mon Feb 01 18:17:35 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
 <repositories description="This requires the HUMAnN2 data manager definition to install all required databases.">
-    <repository changeset_revision="9c4ad82be5bd" name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="9244804f69a7" name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository name="data_manager_metaphlan2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="83f07f40b200"/>
+    <repository name="data_manager_humann2_database_downloader" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ff9cf22838d4"/>
 </repositories>
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