Mercurial > repos > iuc > icescreen
view test-data/NC_004668_137848_164286_icescreen.embl @ 3:2bb38197ff75 draft
planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author | iuc |
---|---|
date | Tue, 06 Dec 2022 10:40:53 +0000 |
parents | 7c77b2896ac2 |
children |
line wrap: on
line source
ID NC_004668; SV 1; ; DNA; ; UNC; 0 BP. XX AC NC_004668; XX PR Project:PRJNA224116; XX DE Enterococcus faecalis V583, complete sequence XX OS . OC . XX FH Key Location/Qualifiers FH FT CDS 1..1512 FT /origid="EF_RS00630" FT /function="Coupling Protein" FT /protein_id="WP_002359295.1" FT /locus_tag="EF_RS00630" FT /codon_start=1 FT /color=6 FT /note="ICEscreen prediction: Coupling protein; BlastP FT result (Annotation confidence: HIGH): Coupling protein TcpA FT [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00; FT Query coverage:100.00%]; Hmmscan result: TcpA [Hit with FT tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]" FT CDS 3098..4381 FT /origid="EF_RS00650" FT /function="Relaxase" FT /protein_id="WP_002359299.1" FT /locus_tag="EF_RS00650" FT /codon_start=1 FT /color=7 FT /note="ICEscreen prediction: Relaxase; BlastP result FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit FT with AAO80018; Identity:99.77%; E-value:0.00e+00; Query FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT FT HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]" FT CDS 17920..20427 FT /origid="EF_RS00720" FT /function="VirB4" FT /protein_id="WP_002359320.1" FT /locus_tag="EF_RS00720" FT /codon_start=1 FT /color="184 134 11" FT /note="ICEscreen prediction: VirB4; BlastP result FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; FT Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%]; FT Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile; FT E-value:1.80e-28; i-Evalue:2.40e-28]" FT CDS 25273..26439 FT /origid="EF_RS00760" FT /function="Tyrosine Integrase" FT /protein_id="WP_002392915.1" FT /locus_tag="EF_RS00760" FT /codon_start=1 FT /color=8 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP FT result (Annotation confidence: HIGH): Tyrosine integrase FT [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00; FT Query coverage:100.00%]; Hmmscan result: Tyrosine integrase FT [Hit with Phage_integrase HMM profile; E-value:4.40e-29; FT i-Evalue:9.70e-29]" FT mobile_element 1..26439 FT /mobile_element_type="other: integrative and conjugative FT element" FT /note="ICEscreen prediction: Putative ICE (one integrase FT Tyr) [Element structure: Single; ICE superfamily: Tn916; FT ICE family: ICESt3; Relaxase family: - (MOBT); Coupling FT protein family: TcpA] (ICEscreen ID: ID_1)" FT /color=15 XX SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other; //