view test-data/NC_004668_137848_164286_icescreen.embl @ 0:7c77b2896ac2 draft

"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author iuc
date Tue, 04 Jan 2022 10:52:42 +0000
parents
children 2bb38197ff75
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ID   NC_004668; SV 1; ; DNA; ; UNC; 0 BP.
XX
AC   NC_004668;
XX
PR   Project:PRJNA224116;
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DE   Enterococcus faecalis V583, complete sequence
XX
OS   .
OC   .
XX
FH   Key             Location/Qualifiers
FH
FT   CDS             1..1511
FT                   /origid="WP_002359295.1"
FT                   /function="Coupling Protein"
FT                   /protein_id="WP_002359295.1"
FT                   /locus_tag="EF_RS00630"
FT                   /codon_start=1
FT                   /color=6
FT                   /note="ICEscreen prediction: Coupling protein; BlastP
FT                   result (Annotation confidence: HIGH): Coupling protein TcpA
FT                   [Hit with AAO80014; Identity:100.00%; E-value:0; Query
FT                   coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM
FT                   profile; E-value:0; i-Evalue:0]"
FT   CDS             3098..4380
FT                   /origid="WP_002359299.1"
FT                   /function="Relaxase"
FT                   /protein_id="WP_002359299.1"
FT                   /locus_tag="EF_RS00650"
FT                   /codon_start=1
FT                   /color=7
FT                   /note="ICEscreen prediction: Relaxase; BlastP result
FT                   (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
FT                   with AAO80018; Identity:99.77%; E-value:0; Query
FT                   coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
FT                   HMM profile; E-value:0; i-Evalue:0]"
FT   CDS             17920..20426
FT                   /origid="WP_002359320.1"
FT                   /function="VirB4"
FT                   /protein_id="WP_002359320.1"
FT                   /locus_tag="EF_RS00720"
FT                   /codon_start=1
FT                   /color="184 134 11"
FT                   /note="ICEscreen prediction: VirB4; BlastP result
FT                   (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
FT                   Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan
FT                   result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0;
FT                   i-Evalue:0]"
FT   CDS             25273..26438
FT                   /origid="WP_002392915.1"
FT                   /function="Tyrosine Integrase"
FT                   /protein_id="WP_002392915.1"
FT                   /locus_tag="EF_RS00760"
FT                   /codon_start=1
FT                   /color=8
FT                   /note="ICEscreen prediction: Tyrosine integrase; BlastP
FT                   result (Annotation confidence: HIGH): Tyrosine integrase
FT                   [Hit with AAO80040; Identity:100.00%; E-value:0; Query
FT                   coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit
FT                   with Phage_integrase HMM profile; E-value:0; i-Evalue:0]"
FT   mobile_element  1..26439
FT                   /mobile_element_type="other: integrative and conjugative
FT                   element"
FT                   /note="ICEscreen prediction: Putative ICE (one integrase -
FT                   Tyr) [Element structure: Single; ICE superfamily: Tn916;
FT                   ICE family: ICESt3; Relaxase family: MOBT; Coupling protein
FT                   family: TcpA] (ICEscreen ID: 2)"
FT                   /color=15
XX
SQ   Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;
//