Mercurial > repos > iuc > integron_finder

comparison test-data/test5_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
comparison
equal deleted inserted replaced
2:392f100eebcd 3:bfd290fe1588
1 # cmd: integron_finder /tmp/tmpx8hgxvv4/files/f/5/6/dataset_f56693b9-7a23-459d-b14d-f33b5dbcd9cc.dat --cpu 1 --keep-tmp --promoter-attI -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 1 # integron_finder 2.0.5
2 # cmd: integron_finder /tmp/tmphy8ici_1/files/4/5/6/dataset_456847c3-0e81-4c5c-b3f2-6b14a0da2b45.dat --cpu 1 --keep-tmp --promoter-attI -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology 3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
3 integron_01 ACBA.007.P01_13 Pc_int1 25 51 -1 NA Promoter Pc_1 NA complete Yes NA circ 4 integron_01 ACBA.007.P01_13 Pc_int1 25 51 -1 NA Promoter Pc_1 NA complete Yes NA circ
4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete Yes NA circ 5 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete Yes NA circ
5 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA complete Yes NA circ 6 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA complete Yes NA circ
6 integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 complete Yes NA circ 7 integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 complete Yes NA circ