Mercurial > repos > iuc > jbrowse
annotate test-data/bam/test.xml @ 18:836d1aa3e89a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 3c41f2c44dd5080cbdb5f6bb85dac2b564c8966e
| author | iuc |
|---|---|
| date | Thu, 16 Nov 2017 09:44:45 -0500 |
| parents | ff11d442feed |
| children | 8f33c9fbc119 |
| rev | line source |
|---|---|
| 3 | 1 <?xml version="1.0"?> |
| 2 <root> | |
| 3 <metadata> | |
| 4 <gencode>11</gencode> | |
| 5 <genomes> | |
| 6 <genome>test-data/merlin.fa</genome> | |
| 7 </genomes> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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8 <general> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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9 <defaultLocation></defaultLocation> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
10 <trackPadding>40</trackPadding> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
11 <shareLink>true</shareLink> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
12 <aboutDescription></aboutDescription> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
13 <show_tracklist>true</show_tracklist> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
14 <show_nav>true</show_nav> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
15 <show_overview>false</show_overview> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
16 <show_menu>true</show_menu> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
17 <hideGenomeOptions>false</hideGenomeOptions> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
18 </general> |
| 3 | 19 </metadata> |
| 20 <tracks> | |
| 21 <track cat="Default" format="pileup"> | |
| 22 <files> | |
| 23 <trackFile path="test-data/bam/154.bam" ext="bam" label="Basic"/> | |
| 24 </files> | |
| 25 <options> | |
| 26 <pileup> | |
| 27 <auto_snp>false</auto_snp> | |
| 28 <bam_indices> | |
| 29 <bam_index>test-data/bam/154.bam.bai</bam_index> | |
| 30 </bam_indices> | |
| 31 </pileup> | |
| 32 </options> | |
| 33 </track> | |
| 34 <track cat="Default" format="pileup"> | |
| 35 <files> | |
| 36 <trackFile path="test-data/bam/154.bam" ext="bam" label="Auto-SNP"/> | |
| 37 </files> | |
| 38 <options> | |
| 39 <pileup> | |
| 40 <auto_snp>true</auto_snp> | |
| 41 <bam_indices> | |
| 42 <bam_index>test-data/bam/154.bam.bai</bam_index> | |
| 43 </bam_indices> | |
| 44 </pileup> | |
| 45 </options> | |
| 46 </track> | |
| 47 </tracks> | |
| 48 </root> |