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comparison test-data/last_align_prot.maf @ 4:8705e0d74a0f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
author iuc
date Wed, 24 Mar 2021 22:36:50 +0000
parents 9a7e91fc6562
children f5a5a2b39ff2
comparison
equal deleted inserted replaced
3:3de2195f32c0 4:8705e0d74a0f
1 # LAST version 1021 1 # LAST version 1205
2 # 2 #
3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09 3 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 4 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
5 # ref_db 5 # /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/hedgdb
6 # Reference sequences=1 normal letters=411 6 # Reference sequences=1 normal letters=411
7 # lambda=0.305935 K=0.102404 7 # lambda=0.305935 K=0.102404
8 # 8 #
9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X * 9 # A R N D C Q E G H I L K M F P S T W Y V B J Z X *
10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 10 # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4
37 # in the reverse complement of the 2nd sequence are used. 37 # in the reverse complement of the 2nd sequence are used.
38 # 38 #
39 # name start alnSize strand seqSize alignment 39 # name start alnSize strand seqSize alignment
40 # 40 #
41 # batch 0 41 # batch 0
42 a score=729 EG2=1.4e-80 E=1.2e-101
43 s NP_002172.2 13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL
44 s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV
45
46 a score=131 EG2=0.4 E=4.1e-14
47 s NP_002172.2 293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL
48 s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV
49
50 a score=41 EG2=3.7e+11 E=0.06
51 s NP_002172.2 91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV
52 s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV
53
54 a score=30 EG2=1.1e+13 E=1.8
55 s NP_002172.2 180 18 + 411 ESKAHVHCSVKSEHSAAA
56 s NP_001034065.1 20 18 + 471 DAKCHSSSSSSSSKSAAS
57
58 a score=24 EG2=6.6e+13 E=12
59 s NP_002172.2 26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY
60 s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY
61
62 a score=24 EG2=6.6e+13 E=12
63 s NP_002172.2 106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW
64 s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW
65
66 # Query sequences=1 42 # Query sequences=1