Mercurial > repos > iuc > medaka_snp
annotate test-data/annotate_vcf_test.vcf @ 1:630e6aeeb7e8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7105600c6ba7a49e8933e1a1357566fc2126df58
author | iuc |
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date | Tue, 26 Sep 2023 10:11:25 +0000 |
parents | 179342c7b86c |
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179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
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1 ##fileformat=VCFv4.1 |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
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2 ##medaka_version=1.0.3 |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
3 ##contig=<ID=NC_045512.2> |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype."> |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score"> |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
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7 NC_045512.2 45 . G C 46.359 PASS GT:GQ 1:46 |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
8 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS GT:GQ 1:260 |
179342c7b86c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff
changeset
|
9 NC_045512.2 1813 . TA T 11.034 PASS GT:GQ 1:11 |