Mercurial > repos > iuc > meryl_arithmetic_kmers
changeset 1:8d594609538e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312
| author | iuc |
|---|---|
| date | Tue, 08 Oct 2024 16:43:43 +0000 |
| parents | 57343b69e9da |
| children | |
| files | arithmetic-kmers.xml macros.xml |
| diffstat | 2 files changed, 10 insertions(+), 9 deletions(-) [+] |
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--- a/arithmetic-kmers.xml Thu Apr 25 21:02:35 2024 +0000 +++ b/arithmetic-kmers.xml Tue Oct 08 16:43:43 2024 +0000 @@ -12,14 +12,14 @@ <command detect_errors="exit_code"><![CDATA[ export GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-8192}/1024)) && mkdir -p ./temp_db/ && - tar -zxf $input_meryldb_02 -C ./temp_db/ && + tar -xmf $input_meryldb_02 --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" -C ./temp_db/ && mv ./temp_db/* tmp.meryl && meryl $arithmetic_operations $X tmp.meryl output read-db.meryl && - tar -zcf read-db.meryldb read-db.meryl + tar -cf read-db.meryldb --use-compress-program="pigz -p \${GALAXY_SLOTS:-1}" read-db.meryl ]]></command> <inputs> <param name="arithmetic_operations" type="select" label="Arithmetic operations" help="Select an operation to be executed"> @@ -43,7 +43,7 @@ <param name="arithmetic_operations" value="increase"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="59500" delta="1000"/> + <has_size value="58946" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output> @@ -54,7 +54,7 @@ <param name="arithmetic_operations" value="decrease"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="42313" delta="1000"/> + <has_size value="45595" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output> @@ -65,7 +65,7 @@ <param name="arithmetic_operations" value="multiply"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="60530" delta="1000"/> + <has_size value="60645" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output> @@ -76,7 +76,7 @@ <param name="arithmetic_operations" value="divide"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="56200" delta="1000"/> + <has_size value="58481" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output> @@ -87,7 +87,7 @@ <param name="arithmetic_operations" value="divide-round"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="56100" delta="1000"/> + <has_size value="58236" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output> @@ -98,7 +98,7 @@ <param name="arithmetic_operations" value="modulo"/> <output name="read_db" ftype="meryldb"> <assert_contents> - <has_size value="37501" delta="1000"/> + <has_size value="36971" delta="3000"/> <expand macro="meryldb_archive_assumptions"/> </assert_contents> </output>
--- a/macros.xml Thu Apr 25 21:02:35 2024 +0000 +++ b/macros.xml Tue Oct 08 16:43:43 2024 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.3</token> <token name="@GALAXY_TOOL_VERSION@">galaxy</token> - <token name="@SUFFIX_VERSION@">6</token> + <token name="@SUFFIX_VERSION@">7</token> <token name="@PROFILE@">22.01</token> <xml name="edam_ontology"> <edam_topics> @@ -16,6 +16,7 @@ <requirement type="package" version="1.1">merqury</requirement> <requirement type="package" version="@TOOL_VERSION@">meryl</requirement> <requirement type="package" version="1.34">tar</requirement> + <requirement type="package" version="2.8">pigz</requirement> </requirements> </xml> <xml name="meryldb_archive_assumptions">