Mercurial > repos > iuc > migmap
annotate test-data/test_out_of_frame.out @ 2:6ad9d48a512e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 60e2302cfac90d0c909ef61815aaaafaaad5816a
| author | iuc |
|---|---|
| date | Mon, 17 Jun 2019 07:53:12 -0400 |
| parents | b2f1cf977ca9 |
| children |
| rev | line source |
|---|---|
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b2f1cf977ca9
planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff
changeset
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1 read.header cdr3nt cdr3aa cdr.insert.qual mutations.qual v.segment d.segment j.segment cdr1.start.in.read cdr1.end.in.read cdr2.start.in.read cdr2.end.in.read cdr3.start.in.read cdr3.end.in.read v.end.in.cdr3 d.start.in.cdr3 d.end.in.cdr3 j.start.in.cdr3 v.del d.del.5 d.del.3 j.del mutations.nt.FR1 mutations.nt.CDR1 mutations.nt.FR2 mutations.nt.CDR2 mutations.nt.FR3 mutations.nt.CDR3 mutations.nt.FR4 rc complete has.cdr3 in.frame no.stop mutations.aa.FR1 mutations.aa.CDR1 mutations.aa.FR2 mutations.aa.CDR2 mutations.aa.FR3 mutations.aa.CDR3 mutations.aa.FR4 pol.v pol.d.5 pol.d.3 pol.j canonical contignt |
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b2f1cf977ca9
planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff
changeset
|
2 >CGTTCAGTTCTTTTGCG|PRCONS=Human-IGHD|SEQORIENT=F|CREGION=Human-IGHD-InternalC|CONSCOUNT=1|DUPCOUNT=1 TGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGG CAPACGGDtg?L*DNWFDPW IIIIIIII IIIIIIIIIII IGHV7-4-1*01 IGHD2-21*01 IGHJ5*01 174 198 249 273 384 437 6 11 30 33 3 6 3 0 S7:A>G,S18:T>G,S26:T>G,S49:C>A,S54:A>T,S58:T>G,S69:G>C S94:A>C S115:A>C S332:T>C S343:A>G false true true false false S2:Q>R,S6:S>A,S8:S>S,S16:S>*,S18:K>*,S19:V>G,S23:A>P S31:Y>S S38:Q>P S110:T>T S114:K>R -1 -1 -1 -1 true CAGGTGCGGCTGGTGCAAGCTGGGTCGGAGTTGAAGAAGCCTGGGGCCTAAGTGTAGGGTTCCTGCAAGCCTTCTGGATACACCTTCACTAGCTCTGCTATGAATTGGGTGCGACCGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACACCAACACTGGGAACCCAACGTATGCCCAGGGCTTCACAGGACGGTTTGTCTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCTGCAGCCTAAAGGCTGAGGACACTGCCGTGTATTACTGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCC |